Jatropha Genome Database

JcCB0034881.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0034881.20 + phase: 0 /pseudo
         (158 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019546001 assembled CDS                                       234   2e-62
GSVIVT01027147001 assembled CDS                                       228   1e-60
GSVIVT01013218001 assembled CDS                                       207   1e-54
GSVIVT01018380001 assembled CDS                                       198   7e-52
GSVIVT01011654001 assembled CDS                                       193   3e-50
GSVIVT01012532001 assembled CDS                                        98   2e-21
GSVIVT01036006001 assembled CDS                                        62   1e-10

>GSVIVT01019546001 assembled CDS
          Length = 609

 Score =  234 bits (596), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 115/134 (85%), Positives = 118/134 (88%), Gaps = 1/134 (0%)

Query: 1   MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESVVGKDFL 60
           MENLISLVNKIQRACTALGDHG+ SALPTLWDSLPAIA            LES+VGKDFL
Sbjct: 1   MENLISLVNKIQRACTALGDHGDESALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFL 60

Query: 61  PRGSGIVTRRPLVLQLHKSDEGSREYAEFLHLPRKRFTDFAAVRKEIQDETDRETGRTKQ 120
           PRGSGIVTRRPLVLQLHK DEG REYAEFLHLPR+RFTDFAAVRKEI DETDRETGRTKQ
Sbjct: 61  PRGSGIVTRRPLVLQLHKIDEG-REYAEFLHLPRRRFTDFAAVRKEISDETDRETGRTKQ 119

Query: 121 ISSVPIHLSIYSPN 134
           ISSVPIHLSIYSPN
Sbjct: 120 ISSVPIHLSIYSPN 133


>GSVIVT01027147001 assembled CDS
          Length = 614

 Score =  228 bits (580), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 113/138 (81%), Positives = 117/138 (84%), Gaps = 4/138 (2%)

Query: 1   MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESVVGKDFL 60
           MENLISLVNKIQRACTALGD+GE S LPTLWD+LPAIA            LESVVGKDFL
Sbjct: 1   MENLISLVNKIQRACTALGDYGEESTLPTLWDALPAIAVVGGQSSGKSSVLESVVGKDFL 60

Query: 61  PRGSGIVTRRPLVLQLHKSDEG----SREYAEFLHLPRKRFTDFAAVRKEIQDETDRETG 116
           PRGSGIVTRRPLVLQLHK DEG     REYAEFLHLPRKRFTDFAAVR+EI DETDRETG
Sbjct: 61  PRGSGIVTRRPLVLQLHKIDEGREDEGREYAEFLHLPRKRFTDFAAVRQEISDETDRETG 120

Query: 117 RTKQISSVPIHLSIYSPN 134
           R+KQISSVPIHLSIYSPN
Sbjct: 121 RSKQISSVPIHLSIYSPN 138


>GSVIVT01013218001 assembled CDS
          Length = 613

 Score =  207 bits (528), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 98/134 (73%), Positives = 113/134 (84%)

Query: 1   MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESVVGKDFL 60
           ME+LI LVN+IQRACT LGD+G  SALPTLW++LP++A            LES+VG+DFL
Sbjct: 4   MESLIGLVNRIQRACTVLGDYGGDSALPTLWEALPSVAVVGGQSSGKSSVLESIVGRDFL 63

Query: 61  PRGSGIVTRRPLVLQLHKSDEGSREYAEFLHLPRKRFTDFAAVRKEIQDETDRETGRTKQ 120
           PRGSGIVTRRPLVLQLHK++EG +EYAEFLHLP++RFTDF+ VRKEIQDETDR TGRTKQ
Sbjct: 64  PRGSGIVTRRPLVLQLHKTEEGLQEYAEFLHLPKRRFTDFSIVRKEIQDETDRMTGRTKQ 123

Query: 121 ISSVPIHLSIYSPN 134
           IS VPIHLSIYS N
Sbjct: 124 ISPVPIHLSIYSAN 137


>GSVIVT01018380001 assembled CDS
          Length = 619

 Score =  198 bits (504), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 94/135 (69%), Positives = 111/135 (82%), Gaps = 1/135 (0%)

Query: 1   MENLISLVNKIQRACTALGDHGEA-SALPTLWDSLPAIAXXXXXXXXXXXXLESVVGKDF 59
           ME+LI LVN+IQRACT LGD+G   +   +LW++LP++A            LES+VG+DF
Sbjct: 4   MESLIGLVNRIQRACTVLGDYGGGDNTFSSLWEALPSVAVVGGQSSGKSSVLESIVGRDF 63

Query: 60  LPRGSGIVTRRPLVLQLHKSDEGSREYAEFLHLPRKRFTDFAAVRKEIQDETDRETGRTK 119
           LPRGSGIVTRRPLVLQLHK++ G +EYAEFLHLP++RFTDFA VRKEIQDETDR TGRTK
Sbjct: 64  LPRGSGIVTRRPLVLQLHKTESGQQEYAEFLHLPKRRFTDFALVRKEIQDETDRITGRTK 123

Query: 120 QISSVPIHLSIYSPN 134
           QIS+VPIHLSIYSPN
Sbjct: 124 QISNVPIHLSIYSPN 138


>GSVIVT01011654001 assembled CDS
          Length = 613

 Score =  193 bits (490), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 91/134 (67%), Positives = 108/134 (80%), Gaps = 2/134 (1%)

Query: 1   MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESVVGKDFL 60
           ME+LI LVN+IQRACT LGDHG      +LW++LP++A            LESVVG+DFL
Sbjct: 4   MESLIGLVNRIQRACTVLGDHGGEGM--SLWEALPSVAVVGGQSSGKSSVLESVVGRDFL 61

Query: 61  PRGSGIVTRRPLVLQLHKSDEGSREYAEFLHLPRKRFTDFAAVRKEIQDETDRETGRTKQ 120
           PRGSGIVTRRPLVLQLHK+++G  EY EFLH P+K+FTDFA+VRKEIQDETDR TG+TK 
Sbjct: 62  PRGSGIVTRRPLVLQLHKTEQGQAEYGEFLHAPKKKFTDFASVRKEIQDETDRITGKTKH 121

Query: 121 ISSVPIHLSIYSPN 134
           IS++PIHLSIYSPN
Sbjct: 122 ISNIPIHLSIYSPN 135


>GSVIVT01012532001 assembled CDS
          Length = 923

 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 62/105 (59%), Gaps = 4/105 (3%)

Query: 34  LPAIAXXXXXXXXXXXXLESVVGKDFLPRGSGIVTRRPLVLQL----HKSDEGSREYAEF 89
           LP +A            +E++VG+DFL RG  + TRRPLVLQL     K D    EY EF
Sbjct: 134 LPQVAFVGCQGSGKSSIIEAMVGRDFLLRGKDVCTRRPLVLQLLQTKQKPDGSDEEYGEF 193

Query: 90  LHLPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPN 134
           LHLP K+F DF  + +EIQ ETDRE G  K +S   I L I+SPN
Sbjct: 194 LHLPGKKFFDFLEIHREIQAETDREAGENKGVSDKQIRLKIFSPN 238


>GSVIVT01036006001 assembled CDS
          Length = 697

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 37/54 (68%)

Query: 81  EGSREYAEFLHLPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPN 134
           + +RE+ EF HLP KRF DF+ +R+EIQDET+R  G  K +S   I L I SPN
Sbjct: 14  DDAREWGEFRHLPGKRFYDFSKIRQEIQDETERGAGFNKGVSEKQIRLMISSPN 67