Jatropha Genome Database

JcCB0034881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0034881.10 + phase: 1 /partial
         (208 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019545001 assembled CDS                                       387   e-108
GSVIVT01019547001 assembled CDS                                       385   e-108
GSVIVT01019833001 assembled CDS                                       309   6e-85
GSVIVT01021749001 assembled CDS                                       154   4e-38
GSVIVT01015720001 assembled CDS                                       151   2e-37

>GSVIVT01019545001 assembled CDS
          Length = 348

 Score =  387 bits (993), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/213 (85%), Positives = 195/213 (91%), Gaps = 10/213 (4%)

Query: 1   TVYGWPKEVPCTEEFPLCAMNPYGRTKLFIEEICRDIYKSDSEWKIILLRYFNPVGAHPS 60
           TVYGWPKEVPCTEEFPLCA NPYGRTKLFIE+ICRDI++SDSEWKI+LLRYFNPVGAHPS
Sbjct: 131 TVYGWPKEVPCTEEFPLCATNPYGRTKLFIEDICRDIHRSDSEWKIVLLRYFNPVGAHPS 190

Query: 61  GHIGEDPRGIPNNLMPYVQQVAVGRRPHLTVFGNDYSTKDGTGVRDYIHVIDLADGHIAA 120
           G+IGEDPRGIPNNLMP+VQQVAVGRRP LTVFG+DYSTKDGTGVRDYIHV+DLADGHIAA
Sbjct: 191 GYIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGSDYSTKDGTGVRDYIHVVDLADGHIAA 250

Query: 121 LRKLSDAKIGCEVYNLGTGKGTSVLEMVTAFEKASGKKIPLVMAGRRPGDAEIVYASTDK 180
           L KL +++IGCEVYNLGTGKGTSVLEMV AFEKASGKKIPLVM GRRPGDAEIVYAST K
Sbjct: 251 LHKLLNSEIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMDGRRPGDAEIVYASTTK 310

Query: 181 AERELNWK----------DQWNWASKNPYGYGS 203
           AE+ELNWK          DQWNWASKNPYGY S
Sbjct: 311 AEKELNWKAKYGISEMCRDQWNWASKNPYGYES 343


>GSVIVT01019547001 assembled CDS
          Length = 348

 Score =  385 bits (990), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/213 (86%), Positives = 193/213 (90%), Gaps = 10/213 (4%)

Query: 1   TVYGWPKEVPCTEEFPLCAMNPYGRTKLFIEEICRDIYKSDSEWKIILLRYFNPVGAHPS 60
           TVYGWPKEVPCTEEFPLCA NPYGRTKL IE+ICRDIY SDSEWKI+LLRYFNPVGAH S
Sbjct: 131 TVYGWPKEVPCTEEFPLCAANPYGRTKLVIEDICRDIYGSDSEWKIVLLRYFNPVGAHSS 190

Query: 61  GHIGEDPRGIPNNLMPYVQQVAVGRRPHLTVFGNDYSTKDGTGVRDYIHVIDLADGHIAA 120
           GHIGEDPRGIPNNLMP+VQQVAVGRRP LTVFG+DYSTKDGTGVRDYIHV+DLADGHIAA
Sbjct: 191 GHIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGSDYSTKDGTGVRDYIHVVDLADGHIAA 250

Query: 121 LRKLSDAKIGCEVYNLGTGKGTSVLEMVTAFEKASGKKIPLVMAGRRPGDAEIVYASTDK 180
           L KL +++IGCEVYNLGTGKGTSVLEMV AFEKASGKKIPLVMAGRRPGDAEIVYAST K
Sbjct: 251 LCKLFNSEIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMAGRRPGDAEIVYASTAK 310

Query: 181 AERELNWK----------DQWNWASKNPYGYGS 203
           AE+ELNWK          DQWNWASKNPYGY S
Sbjct: 311 AEKELNWKAKYGISEMCRDQWNWASKNPYGYES 343


>GSVIVT01019833001 assembled CDS
          Length = 350

 Score =  309 bits (792), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 148/214 (69%), Positives = 171/214 (79%), Gaps = 11/214 (5%)

Query: 1   TVYGWPKEVPCTEEFPLCAMNPYGRTKLFIEEICRDIYKSDSEWKIILLRYFNPVGAHPS 60
           TVYG P ++PC E+F L AMNPYGRTKLF+EEI RDI K++ +WKIILLRYFNPVGAH S
Sbjct: 135 TVYGQPDKIPCVEDFNLMAMNPYGRTKLFLEEIARDIQKAEPDWKIILLRYFNPVGAHES 194

Query: 61  GHIGEDPRGIPNNLMPYVQQVAVGRRPHLTVFGNDYSTKDGTGVRDYIHVIDLADGHIAA 120
           G +GEDP+GIPNNLMPY+QQVAVGR P L V+G+DY T+DG+ +RDYIHV+DLADGHIAA
Sbjct: 195 GKLGEDPKGIPNNLMPYIQQVAVGRLPELNVYGHDYPTRDGSAIRDYIHVMDLADGHIAA 254

Query: 121 LRKL-SDAKIGCEVYNLGTGKGTSVLEMVTAFEKASGKKIPLVMAGRRPGDAEIVYASTD 179
           LRKL +   IGC  YNLGTG+GTSVLEMV AFEKASGKKIP+ +  RR GDA  VYAST+
Sbjct: 255 LRKLFTSEDIGCTAYNLGTGQGTSVLEMVAAFEKASGKKIPIKLCPRRAGDATAVYASTE 314

Query: 180 KAERELNWK----------DQWNWASKNPYGYGS 203
           KA +EL WK          DQW WAS NP+GY S
Sbjct: 315 KAAKELGWKAKYGIAEMCRDQWKWASNNPWGYHS 348


>GSVIVT01021749001 assembled CDS
          Length = 418

 Score =  154 bits (388), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/223 (40%), Positives = 121/223 (54%), Gaps = 31/223 (13%)

Query: 2   VYGWPKEVPCTEEFPLCAMNPYGRTKLFIEEICRDIYKSDSEWKIILLRYFNPVGAHPSG 61
            YG P+++P TE+ P   +NPYG+ K   E+I  D  K +SE  +++LRYFN +G+ P G
Sbjct: 199 TYGEPEKMPITEQTPQVPINPYGKAKKMAEDIILDFSK-NSEMAVMILRYFNVIGSDPEG 257

Query: 62  HIGEDPRGIPNNLMPYVQQ----------VAVGRRPHLTVFGNDYSTKDGTGVRDYIHVI 111
            +GE PR       P +++           A G  P L V G DY T DGT VRDYI V 
Sbjct: 258 RLGEAPR-------PELREHGRISGACFDAASGVIPGLKVKGTDYKTPDGTCVRDYIDVT 310

Query: 112 DLADGHIAALRKLSDAKIGCEVYNLGTGKGTSVLEMVTAFEKASGKKIPLVMAGRRPGDA 171
           DL D H+ AL K +  K+G  +YN+GTGKG SV E V A +KA+G  I +    RRPGD 
Sbjct: 311 DLVDAHVKALNKAAPGKVG--IYNVGTGKGRSVKEFVEACKKATGVNIKVEYLARRPGDY 368

Query: 172 EIVYASTDKAERELNWKDQ-----------WNWASKNPYGYGS 203
             V++   K + ELNW  +           W W   +  GYG+
Sbjct: 369 AEVFSDPSKIDHELNWTAKYTDLQESLRVAWRWQKAHRNGYGT 411


>GSVIVT01015720001 assembled CDS
          Length = 417

 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/222 (40%), Positives = 119/222 (53%), Gaps = 31/222 (13%)

Query: 3   YGWPKEVPCTEEFPLCAMNPYGRTKLFIEEICRDIYKSDSEWKIILLRYFNPVGAHPSGH 62
           YG PK++P TE  P   +NPYG+ K   E++  D  K +S+  +++LRYFN +G+ P G 
Sbjct: 200 YGEPKKMPITEGTPQVPINPYGKAKKMAEDMIIDFSK-NSDMAVMVLRYFNVIGSDPEGR 258

Query: 63  IGEDPRGIPNNLMPYVQQ----------VAVGRRPHLTVFGNDYSTKDGTGVRDYIHVID 112
           +GE PR       P +++           A+G  P L V G DY T DGT VRDYI V D
Sbjct: 259 LGEAPR-------PELREHGRISGACFDAALGIIPGLKVKGTDYKTADGTCVRDYIDVTD 311

Query: 113 LADGHIAALRKLSDAKIGCEVYNLGTGKGTSVLEMVTAFEKASGKKIPLVMAGRRPGDAE 172
           L D H+ AL      K+G  +YN+GTGKG SV E V A +KA+G  I +    RRPGD  
Sbjct: 312 LVDAHVKALAHAKPKKVG--IYNVGTGKGRSVKEFVEACKKATGVDIKVEYLDRRPGDYA 369

Query: 173 IVYASTDKAERELNWKDQ-----------WNWASKNPYGYGS 203
            VY+   K  RELNW  Q           W W   +  GYG+
Sbjct: 370 EVYSDPSKILRELNWTAQYTNLQESLQTAWRWQKSHRNGYGT 411