Jatropha Genome Database

JcCB0034671.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0034671.20 + phase: 0 /partial
         (113 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000215001 assembled CDS                                        82   7e-17

>GSVIVT01000215001 assembled CDS
          Length = 321

 Score = 81.6 bits (200), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 47/90 (52%), Gaps = 39/90 (43%)

Query: 15  ETSSGDAPPSNSGVFSEGERVLAYHGPRIYEAKALFSLCAYLEFLSALIQLITKLNWTCS 74
           +TS+GD P SNSG FSEGE+VLAYHGPRIYEAK                           
Sbjct: 17  DTSTGDLPASNSGTFSEGEKVLAYHGPRIYEAK--------------------------- 49

Query: 75  LPTASINLKFTVVQKAELRKKEWRYFVHYL 104
                       VQKAE RKKEWRYFVHYL
Sbjct: 50  ------------VQKAEFRKKEWRYFVHYL 67