Jatropha Genome Database

JcCB0034671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0034671.10 + phase: 0 
         (86 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000214001 assembled CDS                                        68   7e-13
GSVIVT01032935001 assembled CDS                                        61   1e-10

>GSVIVT01000214001 assembled CDS
          Length = 94

 Score = 68.2 bits (165), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 45/67 (67%), Gaps = 6/67 (8%)

Query: 24 TQARPLNTLESHGPRVRD----KGFFDGLFLGAIKQSGPSPGQGNRLTDSRSFGGINKDG 79
             RP N L+   PR  D    +GFFDGL LGAIKQSGPSPG G++ T++ + GGI   G
Sbjct: 22 IHGRPFNVLKK--PRGPDGEEMRGFFDGLSLGAIKQSGPSPGNGHKFTNAGTLGGIKDSG 79

Query: 80 PSPGQGH 86
          PSPG+GH
Sbjct: 80 PSPGEGH 86


>GSVIVT01032935001 assembled CDS
          Length = 353

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 22 SKTQARPLNTLES-HGPR-VRDKGFFDGLFLGAIKQSGPSPGQGNRLTDS--RSFGGINK 77
          +  Q RP N L+    P      GFFDGL L  IKQS PSPG+GN+ T+   R  GGINK
Sbjct: 21 TAIQGRPFNGLKKPQSPAGTGVMGFFDGLSLRTIKQSRPSPGEGNKFTNVVRRLGGGINK 80

Query: 78 DGPSPGQGH 86
           GPSPGQGH
Sbjct: 81 PGPSPGQGH 89