Jatropha Genome Database

JcCB0034461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0034461.10 - phase: 0 
         (186 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022057001 assembled CDS                                        69   1e-12

>GSVIVT01022057001 assembled CDS
          Length = 161

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 73/173 (42%), Gaps = 42/173 (24%)

Query: 12  GICSRLYNFMTKTLAIYALKSVKLGHPLHKNFARARTRPPCNSDLMVQPVTQEETPFEGV 71
            IC RL+NF  +TLA  A+K V LG P H+   +              PV+    P   +
Sbjct: 12  AICHRLFNFAMQTLAAQAVKPVILGQPGHQPLGQV-------------PVSDASAPIATI 58

Query: 72  EQTLNIKNSD----PFFPNSSSINGLKQEGKELQEVQENNSNFNGEKIEAKVPKKVVSIN 127
               ++ N      P  P +++            + QE               KK VSIN
Sbjct: 59  TSPRSVLNKGYKELPIGPGTAA------------QPQEKGL------------KKSVSIN 94

Query: 128 DRVEEIDTXXXXXXXXXXXENLTSFEQEE-EEPKPLKSILKVGSFSGEKSNSF 179
           + VEEI             E L S E+E+ EEPKPLKSILKVGS    KS SF
Sbjct: 95  ETVEEIPNTSKSRKKKMAPEKLVSLEREKGEEPKPLKSILKVGSNLTGKSVSF 147