Jatropha Genome Database

JcCB0033901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0033901.10 - phase: 0 /pseudo/partial
         (70 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022468001 assembled CDS                                        75   6e-15

>GSVIVT01022468001 assembled CDS
          Length = 456

 Score = 75.1 bits (183), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 43/67 (64%), Gaps = 14/67 (20%)

Query: 1   MQTVTYEVVNASYVPTPQAKQQQN---------ETM-----LPMVMPSVDIFYSALRKAK 46
           +QT  Y +VN SYVP PQ K Q N         ET+     LPMVMPSVDI YSALRKAK
Sbjct: 47  IQTTAYRIVNGSYVPVPQNKNQSNKEDIASTTLETVGAFQKLPMVMPSVDILYSALRKAK 106

Query: 47  RVPPTKG 53
           RV PTKG
Sbjct: 107 RVSPTKG 113