Jatropha Genome Database

JcCB0033401.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0033401.20 + phase: 0 /partial
         (176 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034266001 assembled CDS                                       193   3e-50

>GSVIVT01034266001 assembled CDS
          Length = 394

 Score =  193 bits (491), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 100/172 (58%), Positives = 109/172 (63%), Gaps = 7/172 (4%)

Query: 11  FQRGSCQYGERCKFLHPIXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXGFGVQS---- 64
            Q   CQYGERCKFLH                                  GFGVQS    
Sbjct: 9   IQLNICQYGERCKFLHVTQQQPKPNVSGFGAQTSSNFQHTNVQQQRSNPFGFGVQSNSLP 68

Query: 65  KAANDFGNKQQQQFKPFENKWTRFSPISNGGGGSQSRQPDNQPQAVNHKCTDPESCKREI 124
           K  +DFG+K Q  FKPFENKWTRFSP++ G   S SRQ DNQ Q  NHKCTDPESCKR+I
Sbjct: 69  KGTSDFGSK-QNHFKPFENKWTRFSPLTTGSSSSSSRQSDNQVQPANHKCTDPESCKRQI 127

Query: 125 IEDFEHEKPLWKLTCYGHSKKGPCDIFGDVSYEELRAVAYDDAKRGLSLQSI 176
           +EDFEHE+P+WKLTCYGH K  PCDI GD+SYEELR  AYDDA RGLSLQSI
Sbjct: 128 VEDFEHERPIWKLTCYGHCKSAPCDIVGDISYEELRLAAYDDAGRGLSLQSI 179