Jatropha Genome Database

JcCB0033401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0033401.10 - phase: 0 
         (753 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038350001 assembled CDS                                       337   1e-92
GSVIVT01038333001 assembled CDS                                       194   2e-49
GSVIVT01032039001 assembled CDS                                        50   4e-06

>GSVIVT01038350001 assembled CDS
          Length = 847

 Score =  337 bits (865), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 188/394 (47%), Positives = 246/394 (62%), Gaps = 40/394 (10%)

Query: 5   EDDSTTRIYVGGLGESVTSDDLCTIFSKIGGDIKAVDIIRTKGRSFAYIDFSPSSHNSLS 64
           E  +TTRI+VGGLGE+VTSDD+  + S +G  +K VDI+RTKGRSFAY+DF PSS  SLS
Sbjct: 179 EGITTTRIFVGGLGETVTSDDINKMLSSLG-TVKVVDIMRTKGRSFAYLDFLPSSAKSLS 237

Query: 65  KLFSTYNGCVWKGKRLRLEKAKEHYLDRLKQEWAEDAQLXXXXXXXXXXXXXXKNMESFK 124
           KLFSTYNGC WKG RL+LEKAKEHYL RL +EWAED +L               N+ +  
Sbjct: 238 KLFSTYNGCFWKGGRLKLEKAKEHYLVRLSREWAEDGELAISQPSNSIDKNT--NIVASD 295

Query: 125 KPMKELSSEKKQLRIFFPRLQKLKSLPFSGTGKHRYSFRRVEVPPLPTHFCDCEEHSGSV 184
           K  K ++ EK QLRIFFP+L+K+KSLPFSGTGKH+YSF+R+EVP LPTHFCDCEEHSG  
Sbjct: 296 KLKKTVNQEKSQLRIFFPKLRKMKSLPFSGTGKHKYSFQRIEVPSLPTHFCDCEEHSGPP 355

Query: 185 YTTEKKAIPVLEEQGGGMSKEELDMMNSVMNKLFEIENVSATAHSDIVLTKEQESSIKVS 244
           +  +K+     E Q GGM+K+EL++MNSVMNK+F                 E+E+ +K  
Sbjct: 356 HIAQKQYFCDPESQSGGMNKDELNVMNSVMNKIF-----------------ERETDLK-- 396

Query: 245 DDFQSEENEGYSTEDDDNLIINVVQRRKETAF----------TDQESKLNKGQASKDGPT 294
           D+ + + NE    ED+DNL+IN+   R   A            +Q+S+ N    S DGP 
Sbjct: 397 DELRVDGNESDLVEDEDNLVINMFTGRHRMALLGSQEQEAISMNQKSRFNDTWTSTDGPA 456

Query: 295 QDVLKSQTRR------HDDGNRKGSVSAVSEGNGSFQSNLNEPGNILEAKLIEPESIAKQ 348
              L S  +R        DGN    +SA+     S Q++ N+ G    A+  E     ++
Sbjct: 457 PITLPSTKKRKSLHIDESDGNE--FLSAIPGKKPSLQTHSNDSGVQSGAQTSELRPGIQK 514

Query: 349 SDPKLSWSQKSSWRELIGNKSSSAMNISDILPGI 382
           +   LSWSQKSSWREL+G+K ++   ISD+LPG+
Sbjct: 515 TTANLSWSQKSSWRELVGDKGNNPFIISDMLPGV 548



 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/273 (33%), Positives = 130/273 (47%), Gaps = 34/273 (12%)

Query: 474 AETQPSKQDSDSIANSKNKKLLRHENQGGQTDKPAVL-DKIEVEGTAETQPTKQDSDSTP 532
           +E +P  Q + +  +   K   R E  G + + P ++ D +   G+ + +  K D  +  
Sbjct: 506 SELRPGIQKTTANLSWSQKSSWR-ELVGDKGNNPFIISDMLPGVGSRKQEQVKSDGRNVH 564

Query: 533 XXXXXXXXXLLRHENQRGQTENQGVLDKIELEGPAETQPTKQDSASNETGRGSAWLNKAS 592
                    L+ +EN   Q+   G L    LEG AE QP   D     +GRG++WL K+S
Sbjct: 565 DIIDSKKQNLVNYENLEAQS---GKLKG--LEGLAEAQPPIPDGVVKSSGRGASWLQKSS 619

Query: 593 WTQLVAXXXXXXXXIAQILPGLNFEKQEPVKPDGVIIADSTSCKHSDITEKRKSHTAVDG 652
           WTQLV+        I+QILPG+  EKQ+  K   V +A S+  KH D  +   S T  DG
Sbjct: 620 WTQLVSEANTSSFSISQILPGIPLEKQKLPKFSDVDLAVSSGSKHHDQVKPHTSETIRDG 679

Query: 653 EMALGFERDRDVKSTPELSQHMVVGNNDVPAPTDGKYGSATKQAAPPTENIYRSAKKQFD 712
                   +  ++STPE    M +GNN+V A T  K     K    P +           
Sbjct: 680 --------NEKLESTPEKGVQM-IGNNEVSARTLRK-----KPHIGPKQ----------- 714

Query: 713 LRTNVGGVLIGESCSFMRTDASLKEWENIKAAL 745
             T++  V IGE+CSFMRT AS+KEW   KAAL
Sbjct: 715 --TSIKDVKIGETCSFMRTAASVKEWSKTKAAL 745


>GSVIVT01038333001 assembled CDS
          Length = 218

 Score =  194 bits (492), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 100/190 (52%), Positives = 126/190 (66%), Gaps = 2/190 (1%)

Query: 57  PSSHNSLSKLFSTYNGCVWKGKRLRLEKAKEHYLDRLKQEWAEDAQLXXXXXXXXXXXXX 116
           P SHN      +   G  WKG RL+LEKAKEHYL  L++EWAED +L             
Sbjct: 31  PHSHNLFPSSSARIMGTFWKGGRLKLEKAKEHYLVLLRREWAEDGELAISQPSNSIDKNT 90

Query: 117 XKNMESFKKPMKELSSEKKQLRIFFPRLQKLKSLPFSGTGKHRYSFRRVEVPPLPTHFCD 176
              + S  KP K ++ EK QLRIFFP+L+K+KSLPFSGTGKH+YSF+R+EVP LPTHFCD
Sbjct: 91  K--IVSSDKPKKTVNREKSQLRIFFPKLKKMKSLPFSGTGKHKYSFQRIEVPSLPTHFCD 148

Query: 177 CEEHSGSVYTTEKKAIPVLEEQGGGMSKEELDMMNSVMNKLFEIENVSATAHSDIVLTKE 236
           CEEHSG  +T +K+     E Q GGM+KEEL+MMNSVMNK+FE E     A++   LTK 
Sbjct: 149 CEEHSGPPHTAQKQYFCDREPQSGGMNKEELNMMNSVMNKIFERETDLKVAYNVTGLTKG 208

Query: 237 QESSIKVSDD 246
              S+K +++
Sbjct: 209 GHDSLKSTNE 218


>GSVIVT01032039001 assembled CDS
          Length = 247

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 7   DSTTRIYVGGLGESVTSDDLCTIFSKIGGDIKAVDIIRTKGRS----FAYIDFSPSSHNS 62
           DS  ++YVG L  +VT+D L   FS+ GG + +  + R  G S    F ++ F  SS   
Sbjct: 167 DSPHKVYVGNLARTVTTDTLTQFFSEKGGKVLSAKVSRVPGTSKSSGFGFVSF--SSEED 224

Query: 63  LSKLFSTYNGCVWKGKRLRLEKA 85
           +    S+ N     G+R+R+ KA
Sbjct: 225 VEAAISSCNNAFLDGQRIRVNKA 247