Jatropha Genome Database

JcCB0032921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0032921.10 - phase: 0 /pseudo/partial
         (296 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018124001 assembled CDS                                       305   2e-83
GSVIVT01012140001 assembled CDS                                        60   1e-09

>GSVIVT01018124001 assembled CDS
          Length = 441

 Score =  305 bits (780), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 146/163 (89%), Positives = 157/163 (96%)

Query: 133 VEKHVLESGSIDTVGTVGILDLHPGAINSIPSKSHLEIDTRDIDEERRNGVIEKIKQSAI 192
           VEKHVLESGSIDTVGTVGIL+LHPGAINSIPSKSHLEIDTRDI+E RRN VIEK  QSAI
Sbjct: 278 VEKHVLESGSIDTVGTVGILELHPGAINSIPSKSHLEIDTRDINEMRRNTVIEKTHQSAI 337

Query: 193 TIAKNRGVKLSEFNIINQDPPALSDKSVIEAMEAASKELNLTHKLMISRAYHDSLFMARI 252
           TIAKNRGV+LSEF IINQDPPALSDKS+ +AM+AAS+ELNL+HKLMISRAYHDSLFMARI
Sbjct: 338 TIAKNRGVRLSEFKIINQDPPALSDKSITKAMQAASQELNLSHKLMISRAYHDSLFMARI 397

Query: 253 SPMGMLFIPCYRGYSHKPEEYASIEDIANGVKVLALTLSKLSL 295
           SPMGM+FIPCY+GYSHKPEEYASIEDIANGVKVLALTL+KLSL
Sbjct: 398 SPMGMIFIPCYKGYSHKPEEYASIEDIANGVKVLALTLTKLSL 440


>GSVIVT01012140001 assembled CDS
          Length = 478

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 16/168 (9%)

Query: 138 LESGSIDTVGTVGILDLHPGAINSIPSKSHLEIDTRDIDEERRNGVIEKIKQSAITIAKN 197
           +ES S   V TVG +   P A N IP +    +D R ID+  R  V+ ++      I + 
Sbjct: 315 VESLSGSLVCTVGEISSWPSASNVIPGQVTFTVDLRAIDDMGREAVLYELSDRMYQICEK 374

Query: 198 RGVKLS-----EFNIINQDPPALSDK------SVIEAMEAASKELNLTHKLMISRAYHDS 246
           R V  +     + N +  D   LS +      S ++ ME    E+     +++S A HD+
Sbjct: 375 RSVSCTIERKHDANAVICDTE-LSTQLKSATYSTLKRMEG---EIQGDVPVLMSGAGHDA 430

Query: 247 LFMARISPMGMLFIPCYRGYSHKPEEYASIEDI-ANGVKVLALTLSKL 293
           + M+ ++ +GMLF+ C  G SH P E+   ED+ A G+ +LA   + L
Sbjct: 431 MAMSHLTKVGMLFVRCRGGISHSPAEHVLDEDVWAAGLAILAFLETHL 478