Jatropha Genome Database
- JcCB0032671.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0032671.10 + phase: 0
(349 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01010733001 assembled CDS 410 e-115
GSVIVT01018981001 assembled CDS 94 1e-19
GSVIVT01014553001 assembled CDS 60 1e-09
GSVIVT01020281001 assembled CDS 59 2e-09
GSVIVT01029394001 assembled CDS 59 5e-09
GSVIVT01034202001 assembled CDS 58 7e-09
GSVIVT01025527001 assembled CDS 55 4e-08
GSVIVT01011252001 assembled CDS 55 5e-08
GSVIVT01031973001 assembled CDS 55 6e-08
GSVIVT01001672001 assembled CDS 55 6e-08
GSVIVT01033897001 assembled CDS 54 1e-07
GSVIVT01024759001 assembled CDS 52 3e-07
GSVIVT01027917001 assembled CDS 52 3e-07
GSVIVT01034966001 assembled CDS 52 4e-07
GSVIVT01012135001 assembled CDS 50 1e-06
GSVIVT01012134001 assembled CDS 50 1e-06
GSVIVT01009023001 assembled CDS 50 2e-06
GSVIVT01037490001 assembled CDS 48 6e-06
GSVIVT01007865001 assembled CDS 48 6e-06
GSVIVT01036082001 assembled CDS 48 7e-06
>GSVIVT01010733001 assembled CDS
Length = 340
Score = 410 bits (1054), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/330 (65%), Positives = 248/330 (75%), Gaps = 7/330 (2%)
Query: 1 MSRANVNSVFYADTYHPIQAGSIDGTDIVPHDNAVYRALLCSSAGLYDPFGDPKVIGDPY 60
MS + N+VFYA++YHPIQAGSIDGTD +PHDNAVYRALLCSSAGLYDPFGDPKVIGDPY
Sbjct: 1 MSGSRANAVFYAESYHPIQAGSIDGTDTLPHDNAVYRALLCSSAGLYDPFGDPKVIGDPY 60
Query: 61 CTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYK 120
CTVFVG L+H TTE++L KAMSK+GRVK+LRLVR IVTGAS+GYAFVEYETEREMRR+Y+
Sbjct: 61 CTVFVGHLNHLTTEDTLHKAMSKFGRVKSLRLVRHIVTGASQGYAFVEYETEREMRRAYE 120
Query: 121 DAHHSYIDDSEIMVDYNRQQLMPGWIPXXXXXXXXXXKESGQLRFGGRERPFRAPLQSIP 180
DAHHS IDD EI+VDYNRQQLMPGWIP KESGQLRFGGRERPFRAPL+ IP
Sbjct: 121 DAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGIGGKKESGQLRFGGRERPFRAPLRPIP 180
Query: 181 LDDLKRLGIPPPPEGRYMSCFQVPSPPRRNRSSIDREESSRMRSSIDKXXXXXXXXXXXX 240
LDDLKRLGIPPPPEGRYMS FQVP PPRR RS++DREE S SSID+
Sbjct: 181 LDDLKRLGIPPPPEGRYMSRFQVPPPPRRKRSNMDREEPSHRGSSIDREDRYHKGGSIEG 240
Query: 241 XXXYNKRSSRGKEEHT------SKQRSKEREERYHKGRSLDSSGHSHKKISLEKEKHHEK 294
++ SS +EEH+ K+ S +REER+HK S D SHK+ S + + +K
Sbjct: 241 EEHSHEGSSVDREEHSHRRSSIDKRSSIDREERFHKRSSSDREVRSHKRSSTDLVERSDK 300
Query: 295 SSPLDREETPYKRSS-DLEAYPHTSSKDRK 323
S + EE + RSS D E + H SS DR+
Sbjct: 301 RSFIHGEERFHSRSSMDWEEHSHKSSMDRE 330
>GSVIVT01018981001 assembled CDS
Length = 504
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 63/101 (62%)
Query: 47 YDPFGDPKVIGDPYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAF 106
YDP DP + GDPY T+FV RL++ TTE +++ YG +K +RL+ D T RGYAF
Sbjct: 124 YDPNNDPNISGDPYKTLFVARLNYETTESRIKREFEAYGPIKRVRLITDKETSKPRGYAF 183
Query: 107 VEYETEREMRRSYKDAHHSYIDDSEIMVDYNRQQLMPGWIP 147
+EY R+M+ +YK A +D+ ++VD R + +P W P
Sbjct: 184 IEYMHTRDMKAAYKQADGRKLDNRRVLVDVERGRTVPNWRP 224
>GSVIVT01014553001 assembled CDS
Length = 135
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 58 DPYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRR 117
+P +FV LS TT E L +A SK+G+V N R+V D V+G S+G+ FV Y + +
Sbjct: 38 EPSTNLFVSGLSKRTTSEGLHEAFSKFGQVVNARVVTDRVSGYSKGFGFVRYVSLEDAAE 97
Query: 118 SYKDAHHSYIDDSEIMVDYNR 138
K ++D I +Y R
Sbjct: 98 GIKGMDGKFLDGWVIFAEYAR 118
>GSVIVT01020281001 assembled CDS
Length = 633
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 59 PYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRS 118
P +FV +L+ T +E L S++G V + ++RD TG S YAF+E+ET ++
Sbjct: 241 PDNVLFVCKLNPVTEDEDLHTIFSRFGTVISAEIIRDFKTGDSLCYAFIEFETNEACEQA 300
Query: 119 YKDAHHSYIDDSEIMVDYNRQQLMPGW 145
Y ++ IDD I VD++ Q + W
Sbjct: 301 YFKMDNALIDDRRIHVDFS-QSVSKLW 326
>GSVIVT01029394001 assembled CDS
Length = 170
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 18/113 (15%)
Query: 41 CSSAGL--YDPFGDPKVIGDPYCT----------------VFVGRLSHCTTEESLRKAMS 82
CS+ L + PF P+ D + ++V LS TTEESLR A
Sbjct: 41 CSAPSLSSWGPFNRPRNGNDLFAVACLPSSPNQPSIPKTRLYVSGLSFRTTEESLRNAFE 100
Query: 83 KYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDAHHSYIDDSEIMVD 135
+G++ + LV D + RG+AF+ Y TE E ++ + H ++D I V+
Sbjct: 101 TFGQLVEVNLVMDKIANRPRGFAFLRYSTEEESEKAIEGMHGKFLDGRVIFVE 153
>GSVIVT01034202001 assembled CDS
Length = 133
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 59 PYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRS 118
P T+F+ L+ TT E L + SK+G V + R+V D +G S+G+ FV+Y T + +
Sbjct: 33 PSTTLFISGLNKRTTSEKLNEEASKFGEVVHARVVTDRSSGYSKGFGFVKYATIAQAEQG 92
Query: 119 YKDAHHSYIDDSEIMVDYNRQQLMPGWI 146
K ++D I ++ R + PG++
Sbjct: 93 IKGLDAQFLDGWVIFAEFARSRTPPGYL 120
>GSVIVT01025527001 assembled CDS
Length = 140
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 63 VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
+FV LS TT+E L++A S +G++ +++ D V+G S+G+ FV Y T E ++ +
Sbjct: 36 LFVSGLSRLTTDEKLKEAFSPFGQLLEAKVITDRVSGRSKGFGFVTYTTLEEAEKAREGM 95
Query: 123 HHSYIDDSEIMVD 135
+ ++D I VD
Sbjct: 96 NAKFLDGWVIFVD 108
>GSVIVT01011252001 assembled CDS
Length = 315
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 63 VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
+FV LS T+E++LR A +G + ++++ D ++ S+GYAF+EY TE + K+
Sbjct: 225 LFVTGLSFYTSEKTLRGAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 284
Query: 123 HHSYIDDSEIMVDYNR 138
+ I+ I+VD +
Sbjct: 285 NGKIINGWMIVVDVAK 300
>GSVIVT01031973001 assembled CDS
Length = 121
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 64 FVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDAH 123
FVG L+ T ++SL +A S++G + +++ D TG SRG+ FV + +E+ MR + + +
Sbjct: 11 FVGGLAWATDDQSLERAFSQFGEILESKIINDRETGRSRGFGFVTFSSEQSMRDAIEGMN 70
Query: 124 HSYIDDSEIMVD 135
+D I V+
Sbjct: 71 GQNLDGRNITVN 82
>GSVIVT01001672001 assembled CDS
Length = 153
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 63 VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
F+G LS T++ SL++A K+G + ++V D +G SRG+ FV ++ ++ M + K+
Sbjct: 9 CFIGGLSWSTSDRSLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVSFDDKQAMEDAIKEM 68
Query: 123 HHSYIDDSEIMVD 135
H +D I VD
Sbjct: 69 HGMDLDGRSITVD 81
>GSVIVT01033897001 assembled CDS
Length = 133
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 63 VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
+FVG LS TTE+ L + S+YG+V ++V D V+ S+G+ FV + +E E +++ +
Sbjct: 36 LFVGGLSFYTTEKGLSEHFSQYGQVVEAKIVMDRVSDRSKGFGFVTFASEEEAQKARTEM 95
Query: 123 HHSYIDDSEIMVDYNR 138
++ I VDY +
Sbjct: 96 DGKELNGRTIFVDYAK 111
>GSVIVT01024759001 assembled CDS
Length = 375
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%)
Query: 63 VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
VFVG + TE L S+YG + ++ LVRD TG S+G+AFV YE +R + +
Sbjct: 38 VFVGGIPFDLTEGDLLAVFSQYGEIVDVNLVRDKGTGKSKGFAFVAYEDQRSTNLAVDNL 97
Query: 123 HHSYIDDSEIMVDY 136
+ + I I VD+
Sbjct: 98 NGAQILGRIIRVDH 111
>GSVIVT01027917001 assembled CDS
Length = 283
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 32/53 (60%)
Query: 63 VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREM 115
+FVG LS T ESL + +YG V R++ D TG SRGY FV Y T+ EM
Sbjct: 204 LFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKAEM 256
>GSVIVT01034966001 assembled CDS
Length = 708
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 57 GDPYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMR 116
G + +FVG + TEE +R ++G V + L++D TG +G F++Y T E
Sbjct: 37 GGGFAKLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAE 96
Query: 117 RSYKDAHHSY 126
R+ + H+ Y
Sbjct: 97 RAIRALHNQY 106
>GSVIVT01012135001 assembled CDS
Length = 140
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 43/73 (58%)
Query: 63 VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
+ V LS+ T++ SL++ SK+G++ + +V+D RGYAF++Y ++ + ++
Sbjct: 40 IMVTNLSYATSKSSLQEEFSKFGQIVEVDVVKDKAAKRPRGYAFIQYTSQDHAMLALENM 99
Query: 123 HHSYIDDSEIMVD 135
H Y+D + V+
Sbjct: 100 DHKYLDGRVVCVE 112
>GSVIVT01012134001 assembled CDS
Length = 140
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 43/73 (58%)
Query: 63 VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
+ V LS+ T++ SL++ SK+G++ + +V+D RGYAF++Y ++ + ++
Sbjct: 40 IMVTNLSYATSKSSLQEEFSKFGQIVEVDVVKDKAAKRPRGYAFIQYTSQDHAMLALENM 99
Query: 123 HHSYIDDSEIMVD 135
H Y+D + V+
Sbjct: 100 DHKYLDGRVVCVE 112
>GSVIVT01009023001 assembled CDS
Length = 257
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 53 PKVIGDPYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETE 112
P I D Y ++ V ++ TT + L KYG+V ++ + RD TG SRG+AFV Y+
Sbjct: 9 PPDIRDTY-SLLVLNITFRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYA 67
Query: 113 REMRRSYKDAHHSYIDDSEIMVDY 136
E +++ + +D EIMV +
Sbjct: 68 DEAQKAVEKLDGRNVDGREIMVQF 91
>GSVIVT01037490001 assembled CDS
Length = 583
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 53 PKVIGDP-YCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYET 111
P V DP + +FV L T E+L A +YG+++ +V D +TG S+GY FV ++T
Sbjct: 203 PAVESDPVHRKIFVHGLGWDATNETLTSAFKQYGQIEECNVVTDKITGRSKGYGFVLFKT 262
Query: 112 EREMRRSYKD 121
R++ K
Sbjct: 263 RSGARKALKQ 272
>GSVIVT01007865001 assembled CDS
Length = 163
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 63 VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETERE 114
+F+G LS+ T + SLR+A KYG V R++ D TG SRG+ FV + + E
Sbjct: 42 LFIGGLSYSTDDTSLREAFHKYGEVIEARVIVDRETGRSRGFGFVTFTSSEE 93
>GSVIVT01036082001 assembled CDS
Length = 111
Score = 47.8 bits (112), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 62 TVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKD 121
T+FV +S TTE++L +A S++G V +++ D +G+A+V + E E ++ +
Sbjct: 35 TLFVKGISFSTTEKTLAEAFSQFGEVVEAKIIMDKRKLRPKGFAYVTFTREDEAEKALTE 94
Query: 122 AHHSYIDDSEIMVDY 136
+ +D ++VDY
Sbjct: 95 MNGKVVDGRTVLVDY 109