Jatropha Genome Database

JcCB0032041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0032041.10 - phase: 0 /partial
         (406 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011424001 assembled CDS                                       480   e-136
GSVIVT01019973001 assembled CDS                                       458   e-129
GSVIVT01017641001 assembled CDS                                       217   8e-57
GSVIVT01020111001 assembled CDS                                        79   3e-15
GSVIVT01008089001 assembled CDS                                        79   4e-15
GSVIVT01021556001 assembled CDS                                        77   1e-14

>GSVIVT01011424001 assembled CDS
          Length = 635

 Score =  480 bits (1235), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 239/380 (62%), Positives = 288/380 (75%), Gaps = 2/380 (0%)

Query: 23  RECMMKSRPGESTLPSPIAVNLSDPIKWIEAGAPPAFRTPESVNQTTSAAKLVSSLFIDR 82
           R  +MKS  G   + S    N+S+P++W++  APPA + PE+ N++ S     S LF  R
Sbjct: 20  RYGVMKSPIGFEPIQSSFIFNVSNPLEWVQPRAPPAVQNPENSNKSVSPDTF-SGLFSRR 78

Query: 83  NFSHEVQSSLLTWNHMRHLINYSQQGLPNAIEAIREAQVAWESLMKSVNREEQGDTNENS 142
           NFS EV SSL TWN M+HL N+S+ GLPNA+EAIREA  AW +LM SV +E+QGDTNE+S
Sbjct: 79  NFSSEVLSSLQTWNCMKHLTNHSR-GLPNALEAIREAGAAWVNLMVSVEKEQQGDTNESS 137

Query: 143 LHKVKERQCPHFLNKMNTTELGDDGYKLQIPCGLIQGSAITIIGIPNGLLGSFRIDLSXX 202
           L + KE+QCPHFLNKMN TELGD+ YKL+IPCGL+QGS++TIIGIPNGLLG+FRIDL+  
Sbjct: 138 LGQSKEKQCPHFLNKMNATELGDNSYKLRIPCGLVQGSSVTIIGIPNGLLGNFRIDLTGE 197

Query: 203 XXXXXXXXXXXXHYNVRLLGDKVTENPVIVQNTWTAAHDWGEEERCPQPVPTNNKKVDEL 262
                       HYNVRL GDK+TE+PVIVQNTWTAAHDWGEEERCP  VP++NK VD+L
Sbjct: 198 PHPGEPDPSIILHYNVRLHGDKITEDPVIVQNTWTAAHDWGEEERCPSTVPSSNKTVDDL 257

Query: 263 MQCNEIVGKIDSHRFAAXXXXXXXXXXXXXXXXXXXXWYFPFKQGYLSVMTLRVGEEGIQ 322
           +QCNE+VGK DS++  A                     YFPFKQGYLSVMTLRVGEEGIQ
Sbjct: 258 IQCNEMVGKNDSNKLTASESPKISTHSTLSWNRARARRYFPFKQGYLSVMTLRVGEEGIQ 317

Query: 323 MTVDGKHITSFAYRESLEPWLINEVRISGDLKLISVLASGLPSSEESEHIVDLESLKSTE 382
           MTVDGKH TSFAYRESLEPWL++EVRISGD+KLISV+ASGLP+SE+ EHIVDLE+L+S  
Sbjct: 318 MTVDGKHTTSFAYRESLEPWLVSEVRISGDIKLISVVASGLPTSEDLEHIVDLETLRSVP 377

Query: 383 LPSHKALDLFIGVFSTANNL 402
           +   + +DLFIGVFSTANN 
Sbjct: 378 VRPRQPVDLFIGVFSTANNF 397


>GSVIVT01019973001 assembled CDS
          Length = 636

 Score =  458 bits (1178), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/380 (60%), Positives = 274/380 (72%), Gaps = 1/380 (0%)

Query: 23  RECMMKSRPGESTLPSPIAVNLSDPIKWIEAGAPPAFRTPESVNQTTSAAKLVSSLFIDR 82
           R   MK+   +S L SP + N ++P++WI AG  P  + PE+ +Q  SA  +VSSLF  R
Sbjct: 20  RYVFMKNPISDSYLTSPFSSNSTNPLEWINAGVLPVVQNPENASQVISADSIVSSLFGLR 79

Query: 83  NFSHEVQSSLLTWNHMRHLINYSQQGLPNAIEAIREAQVAWESLMKSVNREEQGDTNENS 142
           N S E Q SL TW+H+++LIN++Q  LPNA+EAI+EA +AW SL+ SV  E+ G TNE+S
Sbjct: 80  NISDEEQQSLHTWDHLKYLINHAQV-LPNALEAIKEAGIAWTSLLASVEEEKLGYTNESS 138

Query: 143 LHKVKERQCPHFLNKMNTTELGDDGYKLQIPCGLIQGSAITIIGIPNGLLGSFRIDLSXX 202
           + + KE+QCP+FLNKMN TELG +GYKL +PCGL QGS+ITIIGIP+GLLG+FRIDL+  
Sbjct: 139 VKRAKEKQCPYFLNKMNATELGSNGYKLGVPCGLTQGSSITIIGIPDGLLGNFRIDLTGE 198

Query: 203 XXXXXXXXXXXXHYNVRLLGDKVTENPVIVQNTWTAAHDWGEEERCPQPVPTNNKKVDEL 262
                       HYNVRL GDK+TE+PVIVQNTWT AHDWGEEERCP P P  NKKVDEL
Sbjct: 199 PLPGEPDPPIILHYNVRLHGDKITEDPVIVQNTWTIAHDWGEEERCPSPAPDKNKKVDEL 258

Query: 263 MQCNEIVGKIDSHRFAAXXXXXXXXXXXXXXXXXXXXWYFPFKQGYLSVMTLRVGEEGIQ 322
            QCNEIVGK D     A                     YFPFKQGY  V T RVG EGIQ
Sbjct: 259 DQCNEIVGKDDKRVLMANYYSNGSRRLPMVQEASKTRKYFPFKQGYHFVSTFRVGSEGIQ 318

Query: 323 MTVDGKHITSFAYRESLEPWLINEVRISGDLKLISVLASGLPSSEESEHIVDLESLKSTE 382
           MTVDGKHITSFAYRESLEPWL++EVR+SGDL LISVLASGLP+SE+ +HI+DLE+LKS  
Sbjct: 319 MTVDGKHITSFAYRESLEPWLVSEVRMSGDLNLISVLASGLPTSEDLDHIIDLEALKSVP 378

Query: 383 LPSHKALDLFIGVFSTANNL 402
           L   K L+LFIGVFSTANN 
Sbjct: 379 LLPEKRLELFIGVFSTANNF 398


>GSVIVT01017641001 assembled CDS
          Length = 637

 Score =  217 bits (552), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 129/332 (38%), Positives = 179/332 (53%), Gaps = 9/332 (2%)

Query: 75  VSSLFIDRNFSHEVQSSLLTWNHMRHLINYSQQGLPNAIEAIREAQVAWESLMKSVNREE 134
           +  L+   N S E   +LL W HM  L+  S   LP   + I+EA  AW+ L  ++  ++
Sbjct: 76  LDDLYALNNISKEDSKALLVWAHMYPLLCRSD-ALPETAQGIKEASSAWKDLWSAIEEDK 134

Query: 135 QGDTN----ENSLHKVKERQCPHFLNKMNTTELGDDGYKLQIPCGLIQGSAITIIGIPNG 190
               N    EN   + K+  CP  ++  + T +   G  L+ PCGL++ S+IT+IGIP+G
Sbjct: 135 ASKFNNTQSENGNPEAKD--CPFSVSTFDKT-VYSSGCILEFPCGLVEDSSITVIGIPDG 191

Query: 191 LLGSFRIDLSXXXXXXXXXXXXXXHYNVRLLGDKVTENPVIVQNTWTAAHDWGEEERCPQ 250
             GSF+++L               HYNV L GDK+TE PVIVQNTWT    WG+EERC  
Sbjct: 192 RNGSFQVELVGLQLPGEREPPILLHYNVSLPGDKLTEEPVIVQNTWTNETGWGKEERCHA 251

Query: 251 PVPTNNKKVDELMQCNEIVGKIDSHRFAAXXXXXXXXXXXXXXXXXXXXWYFPFKQGYLS 310
              TN +KVD L+ CN++V +                              FPF +G   
Sbjct: 252 HASTNIQKVDGLVLCNQLVVRSTVEENLNMTHPNSDMLTNVSSGRAHVSANFPFAEGNPF 311

Query: 311 VMTLRVGEEGIQMTVDGKHITSFAYRESLEPWLINEVRISGDLKLISVLASGLPSSEESE 370
             TL VG EG  MTV+G+H TSF YRE LEPWL++ V+++G L+L+S  A  LP SE+ +
Sbjct: 312 TATLWVGSEGFHMTVNGRHETSFTYREKLEPWLVSGVKVAGGLELLSAFAKDLPVSEDLD 371

Query: 371 HIVDLESLKSTELPSHKALDLFIGVFSTANNL 402
             VD+E LK+  + S K L + +GVFST NN 
Sbjct: 372 LAVDVEHLKAPPV-SRKRLVMLVGVFSTGNNF 402


>GSVIVT01020111001 assembled CDS
          Length = 640

 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 130/307 (42%), Gaps = 27/307 (8%)

Query: 108 GLPNAIEAIRE----AQVAWESLMKSVNREEQGDTNENSLHKVKERQ--CPHFLNKMNTT 161
           GL N+ +   E    A+ AWE       + + G+    S  K + +   CPH +  ++ +
Sbjct: 116 GLLNSKDGYSELHKSAKHAWEVGKTLWEKLDSGEIQVESKRKAQNQSESCPHSI-ALSGS 174

Query: 162 ELGDDGYKLQIPCGLIQGSAITIIGIPNGLLGSFRIDLSXXXXXXXXXXXXXXHYNVRLL 221
           E  D    + +P    +  ++        ++  F ++L               H+N RL 
Sbjct: 175 EFQDRNKIMVLP---YEDQSV--------MVSQFMMELQGLKTVDGEDPPRILHFNPRLK 223

Query: 222 GDKVTENPVIVQNTWTAAHDWGEEERCPQ-PVPTNNKKVDELMQCNEIVGKIDSHRFAAX 280
           GD  +  PVI QNT      WG   RC       + + VD  ++C + +   DSH     
Sbjct: 224 GD-WSGKPVIEQNT-CYRMQWGSALRCEGWKSRADEETVDGQVKCEKWIRDDDSHS-EES 280

Query: 281 XXXXXXXXXXXXXXXXXXXWYFPFKQGYLSVMTLRVGEEGIQMTVDGKHITSFAYRESLE 340
                              W +PF +  L V+T+  G EG  + VDG+H+TSF YR    
Sbjct: 281 KATWWLNRLIGRTKKVAIDWPYPFAEEKLFVLTVSAGLEGYHVNVDGRHVTSFPYRTGFV 340

Query: 341 PWLINEVRISGDLKLISVLASGLPSSEESE----HIVDLESLKSTELPSHKALDLFIGVF 396
                 + ++GD+ + SV A+ LP+S  S     H+  L   +++ LP    ++LFIG+ 
Sbjct: 341 LEDATGLFVNGDIDVHSVFAASLPASHPSFAPQLHLEKLPKWQASPLPD-GPVELFIGIL 399

Query: 397 STANNLS 403
           S  N+ +
Sbjct: 400 SAGNHFA 406


>GSVIVT01008089001 assembled CDS
          Length = 448

 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 94/194 (48%), Gaps = 9/194 (4%)

Query: 215 HYNVRLLGDKVTENPVIVQNTWTAAHDWGEEERCPQ-PVPTNNKKVDELMQCNEIVGKID 273
           H N R+ GD  +  PVI QNT      WG   RC       + + VD L +C + +   D
Sbjct: 25  HLNPRIKGD-WSRKPVIEQNT-CYRMQWGTALRCEGWKSKADEETVDGLAKCEKWIRDDD 82

Query: 274 SHRFAAXXXXXXXXXXXXXXXXXXXXWYFPFKQGYLSVMTLRVGEEGIQMTVDGKHITSF 333
            H   +                    W FPF++  L V+T+  G EG  ++VDG+HITSF
Sbjct: 83  DHS-ESSKSTWWLNRLIGRTKKVTVDWSFPFEEEKLFVLTISAGLEGYHISVDGRHITSF 141

Query: 334 AYRESLEPWLINEVRISGDLKLISVLASGLPSSEES---EHIVDLESL-KSTELPSHKAL 389
            YR          + ++GD+ + ++ A+ LP+S  +   +  +++ S+ K+  LP+   +
Sbjct: 142 PYRTGFALEDATGLSLTGDIDVHAIFAASLPTSHPNYAPQRHLEMSSIWKAPSLPN-GPV 200

Query: 390 DLFIGVFSTANNLS 403
           +LFIG+ S  N+ +
Sbjct: 201 ELFIGILSAGNHFA 214


>GSVIVT01021556001 assembled CDS
          Length = 373

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 101/245 (41%), Gaps = 30/245 (12%)

Query: 117 REAQVAWESLMKSVNREEQGDTNE---NSLHKVKERQCPHFLNKMNTTELGDDGYKLQIP 173
           R A  AW   +++    E  D  E   N + + K   CP +L+ MN  E       + +P
Sbjct: 109 RMADEAWTLGLQAWEDVENFDLKESKQNPIIEGKLESCPWWLS-MNGDEFSRSDRMVFLP 167

Query: 174 CGLIQGSAITIIGIP---------------NG----LLGSFRIDLSXXXXXXXXXXXXXX 214
           CGL  GS+IT++G P               NG    ++  F ++L               
Sbjct: 168 CGLAAGSSITVVGTPHYAHREYVPQLARLRNGDAMVMVSQFMVELQGLKSVDGEDPPKIL 227

Query: 215 HYNVRLLGDKVTENPVIVQNTWTAAHDWGEEERCPQPVPT---NNKKVDELMQCNEIVGK 271
           H N RL GD  +  PVI  NT      WG  +RC   +P+   ++  VD   +C + + +
Sbjct: 228 HLNPRLKGD-WSRRPVIEHNTCYRMQ-WGTAQRC-DGLPSRKDDDMLVDGYGRCEKWI-R 283

Query: 272 IDSHRFAAXXXXXXXXXXXXXXXXXXXXWYFPFKQGYLSVMTLRVGEEGIQMTVDGKHIT 331
            D                          W FPF +G L ++TLR G EG  + V G+H+T
Sbjct: 284 NDIVDLKESKTTSWFKRFIGREQKPEVTWPFPFVEGKLFILTLRAGVEGYHINVGGRHVT 343

Query: 332 SFAYR 336
           SF YR
Sbjct: 344 SFPYR 348