Jatropha Genome Database

JcCB0031871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0031871.10 - phase: 0 /partial
         (80 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035867001 assembled CDS                                        68   7e-13
GSVIVT01015580001 assembled CDS                                        66   4e-12

>GSVIVT01035867001 assembled CDS
          Length = 311

 Score = 68.2 bits (165), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 32/39 (82%), Positives = 37/39 (94%)

Query: 41 MTKRGAYAAISYMSCAVLLVMFNKAALSSYKFPSANVMS 79
          M+KRGAYAAISYMSCAVLLV+FNKAALSSY FP A+V++
Sbjct: 1  MSKRGAYAAISYMSCAVLLVIFNKAALSSYHFPCASVIT 39


>GSVIVT01015580001 assembled CDS
          Length = 340

 Score = 65.9 bits (159), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 34/40 (85%)

Query: 40 AMTKRGAYAAISYMSCAVLLVMFNKAALSSYKFPSANVMS 79
           MTKRG YAAISYM CA+LL++FNKA LSSY FP ANV++
Sbjct: 29 GMTKRGVYAAISYMVCAILLILFNKAVLSSYNFPYANVIT 68