Jatropha Genome Database

JcCB0031431.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0031431.20 - phase: 0 
         (110 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027973001 assembled CDS                                        86   5e-18
GSVIVT01017757001 assembled CDS                                        85   8e-18
GSVIVT01031147001 assembled CDS                                        82   4e-17
GSVIVT01022118001 assembled CDS                                        45   5e-06

>GSVIVT01027973001 assembled CDS
          Length = 118

 Score = 85.5 bits (210), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 68/111 (61%), Gaps = 8/111 (7%)

Query: 6   LYILALIFLHTHF--AICNGVSVSGLN-----SLENTEIDAVMRRVDWLEEAEMESEISR 58
           L++++ IF+   F  ++  G   S LN         T   ++   +   +E EM++EI+R
Sbjct: 7   LFLISSIFVAALFTASVSAGGDFSQLNWEPAAKAAATCQGSIAECLAGRDEFEMDTEINR 66

Query: 59  RVLLMQKYISYETLKRDMVPCAKPGASYYDCHAG-EANPYSRGCEVITRCR 108
           R+L   +YISY  L+R+ VPC++ GASYY+C  G EANPY+RGC  ITRCR
Sbjct: 67  RILATTQYISYGALQRNTVPCSQRGASYYNCKPGAEANPYNRGCSTITRCR 117


>GSVIVT01017757001 assembled CDS
          Length = 152

 Score = 84.7 bits (208), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%), Gaps = 1/62 (1%)

Query: 48  EEAEMESEISRRVLLMQKYISYETLKRDMVPCAKPGASYYDCHAG-EANPYSRGCEVITR 106
           EE EM+SEI+RR+L  ++YISY  L R+ VPC++ GASYY+C  G +ANPY+RGC  ITR
Sbjct: 90  EEFEMDSEINRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCSAITR 149

Query: 107 CR 108
           CR
Sbjct: 150 CR 151


>GSVIVT01031147001 assembled CDS
          Length = 147

 Score = 82.4 bits (202), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 47/61 (77%), Gaps = 1/61 (1%)

Query: 49  EAEMESEISRRVLLMQKYISYETLKRDMVPCAKPGASYYDCHAG-EANPYSRGCEVITRC 107
           E  M+SEI+RR+L   KYISY  L+R+ VPC++ GASYY+C  G +ANPY+RGC  ITRC
Sbjct: 86  EFAMDSEINRRILATSKYISYGALQRNSVPCSRRGASYYNCQPGAQANPYNRGCSTITRC 145

Query: 108 R 108
           R
Sbjct: 146 R 146


>GSVIVT01022118001 assembled CDS
          Length = 125

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 8/61 (13%)

Query: 56  ISRRVLL---MQKYISYETLKRDMVPCA-KPGASYY--DCHA--GEANPYSRGCEVITRC 107
           I RR +    M+ YISY  L  + +PC  + G SYY  +C    G   PY+RGC  ITRC
Sbjct: 64  IDRRSMFWHRMRYYISYGALSANRIPCPPRSGRSYYTHNCFQARGPVRPYTRGCSTITRC 123

Query: 108 R 108
           R
Sbjct: 124 R 124