Jatropha Genome Database

JcCB0031431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0031431.10 - phase: 0 
         (117 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027973001 assembled CDS                                        90   2e-19
GSVIVT01017757001 assembled CDS                                        86   5e-18
GSVIVT01031147001 assembled CDS                                        77   2e-15
GSVIVT01022118001 assembled CDS                                        54   2e-08

>GSVIVT01027973001 assembled CDS
          Length = 118

 Score = 90.1 bits (222), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 71/114 (62%), Gaps = 7/114 (6%)

Query: 6   LYILALIFLYTHFSICNGVSVSGLNSLEITEIDAIVSRPCTRKIGDCL---EEAEMESEI 62
           L++++ IF+   F+    VS  G  S    E  A  +  C   I +CL   +E EM++EI
Sbjct: 7   LFLISSIFVAALFTA--SVSAGGDFSQLNWEPAAKAAATCQGSIAECLAGRDEFEMDTEI 64

Query: 63  SRRVLLMQKKYISYETLKRDMVPCAKPGASYYDCHAG-EANPYSRGCEVITRCR 115
           +RR+L    +YISY  L+R+ VPC++ GASYY+C  G EANPY+RGC  ITRCR
Sbjct: 65  NRRILAT-TQYISYGALQRNTVPCSQRGASYYNCKPGAEANPYNRGCSTITRCR 117


>GSVIVT01017757001 assembled CDS
          Length = 152

 Score = 85.5 bits (210), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 73/120 (60%), Gaps = 8/120 (6%)

Query: 1   MSRPKLYILALIFLYTHFSICN-GVSVSGLNSLEITEIDAIVSR-PCTRKIGDCL--EEA 56
           M     ++L    +  H  + +  V  SG + L+  ++  I +R  C   I +CL  EE 
Sbjct: 35  MGNSSAFVLICAIMAVHMVLTSSAVDFSG-DHLQF-QLGWIPARSACQGSIAECLAGEEF 92

Query: 57  EMESEISRRVLLMQKKYISYETLKRDMVPCAKPGASYYDCHAG-EANPYSRGCEVITRCR 115
           EM+SEI+RR+L   K+YISY  L R+ VPC++ GASYY+C  G +ANPY+RGC  ITRCR
Sbjct: 93  EMDSEINRRIL-ASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 151


>GSVIVT01031147001 assembled CDS
          Length = 147

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 47/62 (75%), Gaps = 2/62 (3%)

Query: 55  EAEMESEISRRVLLMQKKYISYETLKRDMVPCAKPGASYYDCHAG-EANPYSRGCEVITR 113
           E  M+SEI+RR+L   K YISY  L+R+ VPC++ GASYY+C  G +ANPY+RGC  ITR
Sbjct: 86  EFAMDSEINRRILATSK-YISYGALQRNSVPCSRRGASYYNCQPGAQANPYNRGCSTITR 144

Query: 114 CR 115
           CR
Sbjct: 145 CR 146


>GSVIVT01022118001 assembled CDS
          Length = 125

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 14/124 (11%)

Query: 2   SRPKLYILALIFLYTHFSICNGVSVSGLNSLEITEIDAIVSRPCTRKIGDCLEEAEMESE 61
           S PKL +L   F+Y    I N V V+ ++   +  I   +  P T  + +   + + E  
Sbjct: 5   SLPKLLVLCAFFVY----ISNVVVVAQVDESSLKLITDSLEWPSTMSLYNEFGDEDGEDP 60

Query: 62  ---ISRRVLLMQKK--YISYETLKRDMVPCA-KPGASYY--DCHA--GEANPYSRGCEVI 111
              I RR +   +   YISY  L  + +PC  + G SYY  +C    G   PY+RGC  I
Sbjct: 61  DGVIDRRSMFWHRMRYYISYGALSANRIPCPPRSGRSYYTHNCFQARGPVRPYTRGCSTI 120

Query: 112 TRCR 115
           TRCR
Sbjct: 121 TRCR 124