Jatropha Genome Database

JcCB0030781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0030781.10 - phase: 0 /partial
         (268 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035168001 assembled CDS                                       428   e-120
GSVIVT01009087001 assembled CDS                                       173   6e-44

>GSVIVT01035168001 assembled CDS
          Length = 809

 Score =  428 bits (1100), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 201/264 (76%), Positives = 217/264 (82%)

Query: 3   SMNQEGGRKPWNSINFVCAHDGFTLADLVTYXXXXXXXXXXXXXXXXXXXXXXXCGLEGE 62
           ++ QEGGRKPWNSINFVCAHDGFTLADLVTY                       CG EGE
Sbjct: 543 NLYQEGGRKPWNSINFVCAHDGFTLADLVTYNKKHNNANGEDNNDGENHNNSWNCGQEGE 602

Query: 63  FASISVKKLRKRQMRNFFVCLMVSQGVPMIYMGDEYGHTKGGNNNTYCHDNYINYFRWDK 122
           FASISVKKLRKRQMRNFF+CLMVSQGVPMIYMGDEYGHTKGGNNNTYC DNY+NYFRWDK
Sbjct: 603 FASISVKKLRKRQMRNFFLCLMVSQGVPMIYMGDEYGHTKGGNNNTYCQDNYMNYFRWDK 662

Query: 123 KEESSSDFYRFCCLMTKFRSECESLGLNDFPTAERLQWHGHVPRMPDWSETSRFVAFTVT 182
           KEES SDF+RFCCLM+KFR ECESLGLNDFPTAERLQWHG  P MPDWS+TSRFVAFT+ 
Sbjct: 663 KEESLSDFFRFCCLMSKFRQECESLGLNDFPTAERLQWHGRTPGMPDWSKTSRFVAFTMV 722

Query: 183 DTVKGEIYVAFNAKHLPVTVALPERLGYRWEPLVDTGKASPFDFLSGDVPEREIAIKQYS 242
           D+VKGEIYVAFN  HLP+ + LPER GYRW+PLVDT K +PFDFLS DVPER+ A+KQYS
Sbjct: 723 DSVKGEIYVAFNTSHLPIIITLPERPGYRWQPLVDTSKPAPFDFLSNDVPERDTAVKQYS 782

Query: 243 HFLDANLYPMHSYSSIILTLSPDD 266
            F +ANLYPM SYSSIIL L P D
Sbjct: 783 QFTEANLYPMLSYSSIILLLCPVD 806


>GSVIVT01009087001 assembled CDS
          Length = 775

 Score =  173 bits (439), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 103/253 (40%), Positives = 132/253 (52%), Gaps = 19/253 (7%)

Query: 10  RKPWNSINFVCAHDGFTLADLVTYXXXXXXXXXXXXXXXXXXXXXXXCGLEGEFASISVK 69
           RKP++S+NFV AHDGFTL DLV+Y                       CG EGE A   +K
Sbjct: 536 RKPYHSVNFVIAHDGFTLYDLVSYNSKHNNANGEGGKDGTNDNFSWNCGFEGETADAKIK 595

Query: 70  KLRKRQMRNFFVCLMVSQGVPMIYMGDEYGHTKGGNNNTYCHDNYINYFRWDKKEESSSD 129
            LR RQM+NF + LM SQG PM+ MGDEYGHT+ GNNN+Y HD  IN+F W + +    D
Sbjct: 596 ALRSRQMKNFHLALMCSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINHFLWGQLDSRKRD 655

Query: 130 FYRFCCLMTKFRSECESLGLNDFPTAERLQWHGHVPRMPDWSE-TSRFVAFTVTDTVKGE 188
            +RF   + KFR      G  +F   + + WH       +W    S+F+AFT+     G+
Sbjct: 656 RFRFFKEVIKFRRMHHVFGRENFLEKKDVTWH-----EDNWDNYESKFLAFTLHANNGGD 710

Query: 189 IYVAFNAKHLPVTVALPE-RLGYRWEPLVDTGKASPFDFLSGDVPEREIAIKQYSHFLDA 247
           IY+AFN     V VA+P      RW  +VDT   SP DF+S  VP    A          
Sbjct: 711 IYLAFNTHDFFVKVAIPSPPANRRWFRVVDTNLESPKDFVSEGVPGIGSA---------- 760

Query: 248 NLYPMHSYSSIIL 260
             Y +  YSSI+L
Sbjct: 761 --YNVAPYSSILL 771