Jatropha Genome Database

JcCB0030711.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0030711.30 + phase: 0 /partial
         (265 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037722001 assembled CDS                                       302   1e-82

>GSVIVT01037722001 assembled CDS
          Length = 536

 Score =  302 bits (773), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 147/223 (65%), Positives = 171/223 (76%), Gaps = 1/223 (0%)

Query: 43  KNPFNSYKLTPLWRQSHCPAFPQCARKXXXXXXXXXXXXXXXKDRLPADIRVTETVEPNS 102
           KNP N + L+   RQ   P  P                    KDRLPAD+ VTET EPNS
Sbjct: 37  KNPSNLHTLS-YSRQFFHPQHPSHRNSIHFTAFSSPASVASAKDRLPADVEVTETEEPNS 95

Query: 103 RLRLTVEVPEAVCDDCYSRVMNEFMKQARVPGFRPGKNVPESILLSYVGKENVQKATIES 162
           R+RL+VEVP  VC+DCY RV+ EF K A++PGFRPGK VPE++L++++GK+NVQKATIES
Sbjct: 96  RVRLSVEVPAVVCEDCYQRVIREFTKLAKIPGFRPGKKVPETVLINHIGKKNVQKATIES 155

Query: 163 VLKRTLPHAMSSVTGRALRDSIRIVTKFSDMEKAYSSLNTLRYDIIVDVAPEVKWIPENA 222
           +LKRT PHAMSSV GRAL DSIRIVTKFSDME+ YSS   LRYDIIVDVAPEVKW+PEN 
Sbjct: 156 ILKRTFPHAMSSVAGRALNDSIRIVTKFSDMEETYSSQKFLRYDIIVDVAPEVKWVPENG 215

Query: 223 YKILKIVVEIDSDVDAQTASEKELRRRQKSLGAMRIVTDRGLQ 265
           YK LKIVVEIDSD+DAQ ASE+EL+RR KSLG +RI+TDRGLQ
Sbjct: 216 YKNLKIVVEIDSDIDAQRASEQELKRRYKSLGLLRIITDRGLQ 258