Jatropha Genome Database

JcCB0030711.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0030711.20 - phase: 0 
         (187 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037721001 assembled CDS                                       137   3e-33
GSVIVT01002069001 assembled CDS                                        64   3e-11
GSVIVT01002098001 assembled CDS                                        64   5e-11

>GSVIVT01037721001 assembled CDS
          Length = 198

 Score =  137 bits (345), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/201 (44%), Positives = 107/201 (53%), Gaps = 26/201 (12%)

Query: 1   MEGVGSRLGRASSRYGPSATATVFNGPVRKWKKKWXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MEGVGSRLGRASSRY P   ATVFNGPVR+WKKKW                         
Sbjct: 1   MEGVGSRLGRASSRYSP---ATVFNGPVRRWKKKWVHVSSSSSSTVSYHNSQFNGHNS-- 55

Query: 61  XXTTNSRLLLCRWTPLSPADATS-----EEPPKRKFRYTPIVVLEEEQRKAAKQVDHEAK 115
              T SRLLLC+WTPL+  DA       EEPP+RKFRYTP+ VLEE++++AA++ +   +
Sbjct: 56  --NTGSRLLLCKWTPLTSGDAERSFGKPEEPPRRKFRYTPVSVLEEQKKEAARKAEGGVQ 113

Query: 116 TDGTNQFTALHPSKND------ELNNDTALKTETQDSNV-------SNLDLDLCLKGHNG 162
               NQ T    SK D       +NN    ++E  D NV         LDL LCL GHN 
Sbjct: 114 AS-NNQSTTRPTSKIDGFDGKFNINNILMEESEASDGNVLSPQDSKGGLDLGLCLIGHND 172

Query: 163 DPDSVGRTKESQVKKGGPGGL 183
             DS    KE  ++K   GGL
Sbjct: 173 SNDSKDENKEGVLEKMDKGGL 193


>GSVIVT01002069001 assembled CDS
          Length = 157

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 57/116 (49%), Gaps = 27/116 (23%)

Query: 1   MEGVGSRLGRASSRYGPSATATVFNGPVRKWKKKWXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MEGVG+RLGR+S+RYGP   ATVF GPVRKWKKKW                         
Sbjct: 12  MEGVGARLGRSSTRYGP---ATVFTGPVRKWKKKW------VHVSPSSASNHHSQTNGNN 62

Query: 61  XXTTNSRLLLCRWTPLSPAD------------------ATSEEPPKRKFRYTPIVV 98
                S LLL +WTP+S +                   A  EEPP+RKF+Y P+++
Sbjct: 63  NGNNGSHLLLYKWTPISQSSNNGTNADKSSAKDSAAATAAPEEPPRRKFKYIPVLL 118


>GSVIVT01002098001 assembled CDS
          Length = 2707

 Score = 63.5 bits (153), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 55/142 (38%), Positives = 73/142 (51%), Gaps = 34/142 (23%)

Query: 66   SRLLLCRWTPLSPAD------------------ATSEEPPKRKFRYTPIVVLEEEQRKAA 107
            S LLL +WTP+S +                   A  EEPP+RKF+Y PI VLEE++R+ A
Sbjct: 2565 SHLLLYKWTPISQSSNNGTNADKSSAKDSAAATAAPEEPPRRKFKYIPIAVLEEQKREDA 2624

Query: 108  KQVDHEAK-----------TDGTNQFTALHPSKND-ELNNDTAL---KTETQDSNVSNLD 152
            ++ D EAK           T  TN F    P  ND  +  + AL   +   QD N S LD
Sbjct: 2625 EKADDEAKPSDADLSAAEPTLKTNGFDE-KPDINDVPMEENQALDQNQLARQDLNESTLD 2683

Query: 153  LDLCLKGHNGDPDSVGRTKESQ 174
            L L LK H+GDPDS  +T +++
Sbjct: 2684 LSLGLKAHDGDPDSDSKTHQNK 2705