Jatropha Genome Database

JcCB0030711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0030711.10 + phase: 0 
         (343 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037720001 assembled CDS                                       311   4e-85
GSVIVT01008951001 assembled CDS                                        52   4e-07

>GSVIVT01037720001 assembled CDS
          Length = 298

 Score =  311 bits (796), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 168/298 (56%), Positives = 196/298 (65%), Gaps = 43/298 (14%)

Query: 42  LISEHSKQFVPGQVSLFHHSALSSSPFQRFGFTSSASPETNEKE------EGSTAENNGA 95
           LI E + + V  QVSL HH   ++S FQRFG +SSASP+TNEKE      E  T EN+GA
Sbjct: 34  LIGESTDKVVATQVSLLHHLVHNASIFQRFGISSSASPQTNEKETTQSGNEQGTVENDGA 93

Query: 96  SRNADAKPSNKTEDSASEESEKSGCNSESQPTMSQSVKRRRSGTKRTAFXXXXXXXXXXX 155
             +A+   +N+ E+S          +SE+  +M   +K                      
Sbjct: 94  PADAEPAKTNQAEES----------DSEADLSMDDLMK---------------------- 121

Query: 156 XXXXXXXXXXXXXXXXXXXXXXXMQDKVLRTYAEMENVMERTKREAENSKKFAVQNFAKS 215
                                  MQDKVLR+YAEMENVMER +REAENSKKFA+QNFAKS
Sbjct: 122 -----LVLEKEELLKMKNKEIEKMQDKVLRSYAEMENVMERARREAENSKKFAIQNFAKS 176

Query: 216 LLDVADNLGRASAVVKDSFSKIDASTDATGAVPLLKTLLEGVEMTEKQLADVFKKFGVEK 275
           LLDVADNLGRAS VVK+SFSKID S D  GAVPLLKTLLEGVEMTEKQL +VF+KFG+EK
Sbjct: 177 LLDVADNLGRASLVVKESFSKIDESKDTAGAVPLLKTLLEGVEMTEKQLGEVFRKFGMEK 236

Query: 276 FDPINEPFDPHKHYAVFQLPDASKPPGTVAAVLKAGYVLYDRVIRPAEVGVTIAVDND 333
           FDP NE FDPH+H A FQ+PD SKP GTVA VLKAGY+L+DRVIRPAEVGVT AVDN+
Sbjct: 237 FDPTNEQFDPHRHNAAFQIPDPSKPSGTVAVVLKAGYMLHDRVIRPAEVGVTQAVDNN 294


>GSVIVT01008951001 assembled CDS
          Length = 298

 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 19/151 (12%)

Query: 180 QDKVLRTYAEMENVMERTKREAENSKKFAVQNFAKSLLDVADNLGRASAVVK---DSFSK 236
           ++K +R  A+ +N  +R+++E    +  A     +SLL + DN  RA   +K   +   K
Sbjct: 136 KEKYIRLQADFDNFRKRSEKERLTVRTDAQGEVVESLLPMIDNFERAKQQIKPETEKEKK 195

Query: 237 IDASTDATGAVPLLKTLLEGVEMTEKQLADVFKKFGVEKFDPINEPFDPHKHYAVFQLPD 296
           ID S              +G+    KQ  ++ +   V     + +PFDP  H A+ +   
Sbjct: 196 IDTS-------------YQGIY---KQFVEIMRSCHVAAVATVGKPFDPALHEAIAREES 239

Query: 297 ASKPPGTVAAVLKAGYVLYDRVIRPAEVGVT 327
                G +   ++ G++L DR++RPA V V+
Sbjct: 240 QEFKEGIIIQEIRRGFLLGDRLLRPAMVKVS 270