Jatropha Genome Database
- JcCB0030351.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0030351.20 + phase: 0 /partial
(281 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01013538001 assembled CDS 91 7e-19
GSVIVT01026027001 assembled CDS 84 8e-17
GSVIVT01031692001 assembled CDS 79 2e-15
GSVIVT01013506001 assembled CDS 79 2e-15
GSVIVT01030585001 assembled CDS 65 5e-11
GSVIVT01031694001 assembled CDS 62 2e-10
GSVIVT01026026001 assembled CDS 60 1e-09
GSVIVT01010911001 assembled CDS 60 1e-09
>GSVIVT01013538001 assembled CDS
Length = 711
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 127/277 (45%), Gaps = 55/277 (19%)
Query: 5 VPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQGDLPKFVCGSYF-F 63
+PE I+ I S+LP KSLLRF+C+ K+ +LIS P F+ +H+ R Q P V G
Sbjct: 4 IPEVIMVDILSRLPVKSLLRFRCVCKAWCTLISHPQFVETHL-RQQHKRP--VIGLVVPH 60
Query: 64 DVNTAVEAKPVKSPLKQQLPFLNQTNHKILCSCDGLILLRARINTPTLYSKDNEANALRM 123
V+ + + L+ L N+ +L SC+GL +
Sbjct: 61 SVDDPLHKDDLAVDLELHLGIPNKRTTTVLDSCNGL-----------------------L 97
Query: 124 CVSWDFSSNNSVSGADFDSNYYSI------IVWNPLIREYRILPMPASGDYVS--YGLGY 175
CV D +YS+ I+WNP R+ +P P+ Y + Y Y
Sbjct: 98 CV------------VDCYYGFYSLKPPQKLILWNPSTRQCNHIPCPSFVGYQNCMYSFFY 145
Query: 176 DSVTDDYKVVQCGYSKNHLIKQNALI-VLSLKSNSMRKHENLKFNISYGQAGTFLHGALH 234
D +DDYK+V+ L K I + +LK+N R+ E ++ + T+ +G LH
Sbjct: 146 DPGSDDYKIVRI---FTFLGKDKTGIDIFTLKTNKWRRVEETHSSVIGYWSATYFNGNLH 202
Query: 235 WVAELANSGWVADFANSGKIIVAFNLADEKIVQLKLP 271
W+A G+ D +S +VAF+L +EK +++LP
Sbjct: 203 WLA-FRYGGYGEDERSS---MVAFSLREEKFQEMELP 235
>GSVIVT01026027001 assembled CDS
Length = 372
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 112/271 (41%), Gaps = 62/271 (22%)
Query: 5 VPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQGDLPKFVCGSYFFD 64
+P+EI+ +I LP KSL+RFKC+SKS +IS P+F + + + D
Sbjct: 26 IPDEIILEILCLLPVKSLMRFKCVSKSWREMISDPDFEKKQLAVAARD------------ 73
Query: 65 VNTAVEAKPVKSPLKQQLPFLNQTNHKILCSCDGLILLRARINTPTLYSKDNEANALRMC 124
+ S L P + L SC L P +S ++E
Sbjct: 74 -----SGEVYNSRLIMHYPSMK------LKSCP----LSCLFYEPVGHSVNHE------- 111
Query: 125 VSWDFSSNNSVSGADFDSNYYSIIVWNPLIREYRILPMPAS----GDYVSYGLGYDSVTD 180
+ N+ + VWNP RE+R LP P S V+YG GYDS+ D
Sbjct: 112 ----YPENDII------------FVWNPSTREFRRLP-PISFMQCFHLVAYGFGYDSIAD 154
Query: 181 DYKVVQCGYSKNHLIKQNALIVLSLKSNSMRKHENLKFNISYGQAGTFLHGALHWVAELA 240
DYKV + G + + V SL+ N RK EN + + G ++G++
Sbjct: 155 DYKVTRVGCYCIGRYYEYQVRVFSLRGNVWRKIENFPCYLFTDEPGIHVNGSI------- 207
Query: 241 NSGWVADFANSGKIIVAFNLADEKIVQLKLP 271
N G V D N +V +LA E + LP
Sbjct: 208 NFGGVGDSENYYWSVVGLDLASESYRMVPLP 238
>GSVIVT01031692001 assembled CDS
Length = 357
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 117/288 (40%), Gaps = 66/288 (22%)
Query: 4 RVPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQGDLPKFVC----- 58
+P I+ I +LP KSL+R +C+ K+ +LIS P+F++SH+ Q C
Sbjct: 3 ELPLHIIENILLRLPVKSLIRSRCVCKAWRTLISHPHFVKSHLRLPQTQARTQFCTLNYG 62
Query: 59 ---GSYFFDVNTAV-EAKPVKSPLKQQLPF-----LNQTNHKI--LCSCDGLILLRARIN 107
+Y+ V + + + L F + +++ L SCDGL+ L N
Sbjct: 63 EPGDNYYLVVGASTKDCEAFSDDNGGALAFDYLFDIGGFKYEVVLLDSCDGLLCLVDLAN 122
Query: 108 TPTLYSKDNEANALRMCVSWDFSSNNSVSGADFDSNYYSIIVWNPLIREYRILPM-PASG 166
I++WNP R+ LP P
Sbjct: 123 --------------------------------------KIVLWNPSTRQCNQLPPNPNVL 144
Query: 167 DYVS-YGLGYDSVTDDYKVVQCGYSKNHLIKQNALIVLSLKSNSMRKHENLKFNISYGQA 225
D++ +G GYDS DDYKV + + + V SLKSN ++ + +
Sbjct: 145 DFLGCHGFGYDSFADDYKVFLVSMLNPNF--ETVVDVFSLKSNKWKRIQEKHHTRAARMC 202
Query: 226 GTFLHGALHWVAELANSGWVADFANSGKIIVAFNLADEKIVQLKLPKD 273
T LHGALHWVA G+ I+AF+ E+ ++ +P++
Sbjct: 203 ATVLHGALHWVAYDPILGF--------DTIMAFDFEKERFREMAIPRE 242
>GSVIVT01013506001 assembled CDS
Length = 423
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 128/279 (45%), Gaps = 64/279 (22%)
Query: 12 QIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQGD-----LPKFVCGS----YF 62
I +LP KS++RF+C+ KS +L P+FI H+ ++ + L K + S Y
Sbjct: 27 DIHLRLPVKSIVRFRCVCKSWCTLFDDPDFISMHLRQASANSNGRLLFKHLSSSEQEIYS 86
Query: 63 FDVNTA-VEAKPVKSPLKQQLPFLNQTNHKILCSCDGLILLRARINTPTLYSKDNEANAL 121
N A E + ++ P+ + + ++I+ S +GLI L
Sbjct: 87 LRSNIAFAEVRRLEVPVPSKTDY-----YQIVGSSNGLICL------------------- 122
Query: 122 RMCVSWDFSSNNSVSGADFDSNYYSI--IVWNPLIREYRILPMPASGDY------VSYGL 173
+ ++F +Y S+ +WNP IRE++ LP ++ V G
Sbjct: 123 --------------TESNFKGSYLSLNLFLWNPAIREFQTLPKYHINNFTSPLMVVGLGF 168
Query: 174 GYDSVTDDYKVVQCGYSKNHLIKQNALIVLSLKSNSMRKHE-NLKFNISYGQAGTFLHGA 232
+ V +DYKVV+ Y + K + V SL++ S RK + N+ I + TF++GA
Sbjct: 169 AFHPVINDYKVVRIVYFMRN--KTSEADVYSLRTGSWRKVDANICCYIHSNVSRTFINGA 226
Query: 233 LHWVAELANSGWVADFANSGKIIVAFNLADEKIVQLKLP 271
LHW+A N + N+ +I++F++A + ++ LP
Sbjct: 227 LHWLAGKKN-----EMDNTDNLILSFDMAKDVFKEIMLP 260
>GSVIVT01030585001 assembled CDS
Length = 423
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 122/269 (45%), Gaps = 41/269 (15%)
Query: 13 IFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQGD-----LPKFVCGSYFFDVNT 67
+ +LP KS++RFKC+ +S +L + P+FI ++ R+ L K++ S +V +
Sbjct: 29 VLLRLPVKSIIRFKCVCQSWQTLFNDPDFINMNLRRAITHNNCCMLLKYLSSSE-EEVYS 87
Query: 68 AVEAKPVKSPLKQQLPFLNQTN-HKILCSCDGLILLRARINTPTLYSKDNEANALRMCVS 126
K + Q+P ++T+ + I+ S +GLI L N + + D
Sbjct: 88 LRCDKDFAEFRRLQVPVPSKTDYYHIVGSSNGLICLTESNNKGSYVTVDT---------- 137
Query: 127 WDFSSNNSVSGADFDSNYYSIIVWNPLIREYRILPMPASGDYVSYGLGYDSVTDDYKVVQ 186
F N SV+ W PL + M + V G + DDYKVV+
Sbjct: 138 --FLWNPSVTAQ-----------WKPLPKYLINNMMTSPFMVVGLGFAFHPQIDDYKVVR 184
Query: 187 CGY---SKNHLIKQNALIVLSLKSNSMRKHENLKFNISYGQAGTFLHGALHWVAELANSG 243
Y SK + + +L + K+ + H ++ +S TF++GALHW+A N G
Sbjct: 185 IVYFLKSKTYEVHVYSLKQDAWKNIDAKVHCHIHDTVSR----TFVNGALHWLAAKKNQG 240
Query: 244 WVADFANSGKIIVAFNLADEKIVQLKLPK 272
S +I++F++ ++ + ++ LP+
Sbjct: 241 ----RGKSDDLILSFDMVEDNLREMILPE 265
>GSVIVT01031694001 assembled CDS
Length = 184
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 89/200 (44%), Gaps = 58/200 (29%)
Query: 4 RVPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSH--VPRSQGDLPKFVCGSY 61
+P I+ I +LP KSL+RF+C+ K+ +LIS P+F+RSH +P++Q
Sbjct: 3 ELPLHIIENILLRLPVKSLIRFRCVCKAWRTLISHPHFVRSHFRLPQTQA---------- 52
Query: 62 FFDVNTAVEAKPVKSPLKQQLPFLNQT----NHKILCSCDGLILLRARINTPTLYSKDNE 117
+ +L ++ + NH +++RA +S DN+
Sbjct: 53 -----------------RTRLCIIDYSERGDNHS--------MVVRASTKDCEAFS-DND 86
Query: 118 ANALRMCVSWDF-----------SSNNSVSGADFDSNYYSIIVWNPLIREYRILPM-PAS 165
+L +D S + + AD + I++WNP R++ LP P
Sbjct: 87 GGSLAFDYLFDIGKFKHEVVLLDSCDGLLCIADLANK---IVLWNPSTRQFNQLPPNPNV 143
Query: 166 GDYVS-YGLGYDSVTDDYKV 184
D+V +G GYDS DDYK+
Sbjct: 144 VDFVGCHGFGYDSSADDYKI 163
>GSVIVT01026026001 assembled CDS
Length = 243
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 16/124 (12%)
Query: 146 SIIVWNPLIREYRILP-MPASGDY--VSYGLGYDSVTDDYKVVQ---CGYSKNHLIKQNA 199
+I VWNP I+E + LP P + VSY GYDS+TDDYKVV+ C + ++ +
Sbjct: 5 TIFVWNPSIKESKRLPSKPFEQLFYLVSYAFGYDSITDDYKVVRLVCCSINDSY---EYH 61
Query: 200 LIVLSLKSNSMRKHENLKFNISYGQAGTFLHGALHWVAELANSGWVADFANSGKIIVAFN 259
+ V SL+SN+ RK + + + +AG ++G+++W D N I + +
Sbjct: 62 VEVFSLRSNAWRKIRSFPYFLFTDEAGKHVNGSINWAVS-------RDKNNDHWFIASLD 114
Query: 260 LADE 263
LA E
Sbjct: 115 LATE 118
>GSVIVT01010911001 assembled CDS
Length = 415
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 97/239 (40%), Gaps = 43/239 (17%)
Query: 8 EIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQGDLPKFVCG--SYFFDV 65
+++ +IF + P K LLRF+ +SK SLIS P+F H RS +P + G + FD
Sbjct: 37 DLLTEIFLRTPVKPLLRFRSVSKRWLSLISDPHFCHRHARRSSASVPGVLLGLPNSNFDF 96
Query: 66 NTAVEAKPVKSPLKQQLPFLNQTNHKILCSCDGLILLRARINTPTLYSKDNEANALRMCV 125
+ E K + PL+ + K+L C+GL +C
Sbjct: 97 ISFDEKKASEPPLRSLDFIGDPLGVKVLQVCNGL-----------------------LCC 133
Query: 126 SWDFSSNNSVSGADFDSNYYSIIVWNPLIREYRILPMPAS--GDYVSYG--LGYDSVTDD 181
S +V NYY + N R + +LP P S G +G L +D
Sbjct: 134 S-------TVRSLGTSRNYY---ICNLATRRFSVLPPPCSSGGRDTVFGINLAFDPSKSP 183
Query: 182 YKVVQCGYSKNHLIKQNALIVLSLKSNSMR---KHENLKFNISYGQAGTFLHGALHWVA 237
Y V C S I + + S + R K F++ + G F +GA+HW++
Sbjct: 184 YYSVICVRSCEVSISHYQIEIYSSGTGDWRLSGKPFRAPFDMVF-YDGVFWNGAVHWIS 241