Jatropha Genome Database

JcCB0030351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0030351.10 - phase: 2 /TE/pseudo/partial
         (711 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014094001 assembled CDS                                       142   5e-34
GSVIVT01019943001 assembled CDS                                        85   1e-16
GSVIVT01008224001 assembled CDS                                        85   1e-16
GSVIVT01015587001 assembled CDS                                        75   1e-13
GSVIVT01017364001 assembled CDS                                        74   3e-13

>GSVIVT01014094001 assembled CDS
          Length = 677

 Score =  142 bits (359), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 175/392 (44%), Gaps = 26/392 (6%)

Query: 304 PNIG-GKFFHIRCACHILNLCVQDGLKILDSFISPIKKAISYLWTHPQVMKSWAKFCKEN 362
           P +G G+   +RC  H+LNL VQD ++ L      I++++ Y+ T    +  + +  ++ 
Sbjct: 288 PLLGSGQLLDVRCVGHVLNLIVQDCIEALREVTHKIRESVRYVKTSQATLGKFNEIAQQV 347

Query: 363 --NKRPKRFPRDVPTRWNSTYELLNESFSYKELLCFFVTNNIE-DINLYPQNWEICAKIL 419
             N +   F  D PT+WNSTY +L+    YK        ++    + L    WE  + I 
Sbjct: 348 GINSQQNLF-LDCPTQWNSTYLMLDRVLEYKGAFSLLQEHDPGYTVALSDTEWEWASSIT 406

Query: 420 DILKIFNDATYKFSGVYYPTSNLFLPMCINIVTALQEF--QNDDLLKDCIFSMKKKWLSY 477
             +K+  +     S    PT+N++ P   +I   L E+    DD +      MK K+  Y
Sbjct: 407 SYMKLLLEIIAVLSSNKCPTANIYFPEICDIHIQLIEWCKSPDDFISSLALKMKAKFDKY 466

Query: 478 FKNIPPLYLVAIIFDPRCRMDVLCDYLTIYYDVLNLDVEDNVNINVVMHEVKQNIMQLYN 537
           +        VA+I DPR +M ++  Y   Y  +   D  D +       +V   I +L+N
Sbjct: 467 WSKCSLALAVAVILDPRFKMKLVEYY---YPQIYGTDAADRIK------DVSDGIKELFN 517

Query: 538 EFXXXXXXXXXXXXXXXXNIPQFSTQRVSGVGVAQQVLLQRQKRTRESSSISEFDNYLTT 597
            +                ++P  S      +    + +    + ++  + +S+ D YL  
Sbjct: 518 VYCSTSASLHQGVALPGSSLPSTSNDSRDRLKGFDKFI---HETSQNQNIVSDLDKYLEE 574

Query: 598 SFEFSDDYADADFPILDWWSRHANTFPILSLLAKQILAAPVSTVAVEQAFSQGGNILDET 657
              F     + DF IL+WW      +PILS++ + +L  P+STVA E  FS G  +LD  
Sbjct: 575 PV-FP---RNCDFHILNWWKVQKPRYPILSMMVRDVLGIPMSTVAPEVVFSTGARVLDHY 630

Query: 658 RSRMTPDSLEAQACVDDWTKAELRAQENPNEN 689
           RS + PD+ +A  C  DW +  L   E PN++
Sbjct: 631 RSSLNPDTRQALICTQDWLQTGL---EEPNQS 659


>GSVIVT01019943001 assembled CDS
          Length = 276

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 98/188 (52%), Gaps = 28/188 (14%)

Query: 306 IGGKFFHIRCACHILNLCVQDGLKILDSFISPIKKAISYLWTHPQVMKSWAKFCKENNKR 365
           + GK FH+RCA H+LNL V++GL +++  I  I+++++Y    P  M+ +     E+  R
Sbjct: 101 LNGKIFHMRCAAHVLNLIVKEGLDVIEVEIEKIRESVAYWSATPSRMEKF-----EDAAR 155

Query: 366 PKRFP------RDVPTRWNSTYELLNESFSYKELLC--------FFVTNNIEDINLYPQN 411
             R P       D  TRWNSTY +L+ + +YK++          + V    E+ N+    
Sbjct: 156 QLRIPCNKKLSLDCKTRWNSTYLMLSIAITYKDVFPRLKQREKYYMVVPTEEEWNMAK-- 213

Query: 412 WEICAKILDILKIFNDATYKFSGVYYPTSNLFLPMCINIVTALQEF--QNDDLLKDCIFS 469
            EIC +    LK+F + T  FSG  YPT+N F      I  AL ++   ++D++K    S
Sbjct: 214 -EICGR----LKLFYNITELFSGRNYPTANTFFIKVCEIKEALYDWLICSNDVVKTMASS 268

Query: 470 MKKKWLSY 477
           M +K+  Y
Sbjct: 269 MLQKFDKY 276


>GSVIVT01008224001 assembled CDS
          Length = 680

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/396 (21%), Positives = 169/396 (42%), Gaps = 67/396 (16%)

Query: 308 GKFFHIRCACHILNLCVQDGLKILDSFISPIKKAISYLWTHPQVMKSWAKFCKENNKRPK 367
           G F ++ CA   LN+ + DGL+     I+ I++ +  + +  ++ + + +F     +   
Sbjct: 297 GPFCYLPCAARTLNMIIDDGLRTTKPVITKIREFVLEMNSSSEISEDFIQFTTVYQEGSW 356

Query: 368 RFPRDVPTRWNSTYELLNESFSYKELLCFFVTNNIEDINLYPQNWEICAKIL-------- 419
           + P D   RW+  Y++L       +++C    +    I  Y +   +  ++L        
Sbjct: 357 KIPLDASARWSGNYQML-------DIVCKAGKSMDAVIRKYEET--LSGRMLLNPAEKNA 407

Query: 420 -DILKIFNDATYKFSGVY---YPTSNL---FLPMCINIVTALQE-FQNDDLLKDCIFSMK 471
            +I+  + +A YK +       PT  L   F+     ++   +E  ++ D LK+    M 
Sbjct: 408 VNIVYAYLEAFYKITLNMINKVPTIGLVLFFMDHISEMIAGCRESLRSPDWLKNAAEEMA 467

Query: 472 KKWLSYFKNIPPL--YLVAIIFDPRCRMDVLCDYLTIYYDVLNLDVEDNVNINVVMHEVK 529
           KK  SY   +  +  Y+ AI+ DPR + ++               + +++N    + E +
Sbjct: 468 KKTRSYSNQVCNIFTYMTAIL-DPRIKAEL---------------IPESLNSETNLEEAR 511

Query: 530 QNIMQLY--NEFXXXXXXXXXXXXXXXXNIPQFSTQRVS-GVGVA-QQVLLQRQKRTRES 585
            + M+ Y  N F                    +S Q +  G  V+  + + ++++R   S
Sbjct: 512 THFMRNYSTNHFPSIAS--------------GYSAQEIEDGASVSFAEEIARKKRRVSMS 557

Query: 586 SSISEFDNYLTTSFEFSDDYADADFPILDWWSRHANTFPILSLLAKQILAAPVSTVAVEQ 645
           ++  E   YL      S+  A     +L+WW  +   +P LS +A+  LA   ++VA E+
Sbjct: 558 TATDELTQYL------SEPPAPIPTDVLEWWKVNTTRYPRLSTMARDFLAVQATSVAPEE 611

Query: 646 AFSQGGNILDETRSRMTPDSLEAQACVDDWTKAELR 681
            F   G+ +D+ R  M  DS +A  C+  WT   ++
Sbjct: 612 VFCGKGDEMDKQRFSMPHDSTQALLCIRSWTHGGIK 647


>GSVIVT01015587001 assembled CDS
          Length = 839

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 160/390 (41%), Gaps = 44/390 (11%)

Query: 306 IGGKFFHIRCACHILNLCVQDGLKILDSFISPIKKAISYLWTHPQVMKSWAKFCKENNKR 365
           + G+F    C    L+    D L      I  I+ ++ Y+ T     + + +  K+  + 
Sbjct: 370 LNGQFLVGNCIARTLSSMALDVLGAGRETIKKIRDSVKYVKTSESHEEKFLEL-KQQLQV 428

Query: 366 P--KRFPRDVPTRWNSTYELLNESFSYKELLCFFVTNNIEDINLYPQ--NWEICAKILDI 421
           P  K    D   +WN+TYE+L  +   KE+     T++  D    P   +W+    +   
Sbjct: 429 PSTKSLFLDDQNQWNTTYEMLVAASELKEVFSCLDTSD-PDYKEAPSMDDWKQVETLCTY 487

Query: 422 LKIFNDATYKFSGVYYPTSNL-FLPMCINIVTALQEFQN--DDLLKDCIFSMKKKWLSYF 478
           LK+F DA    +      +   F      I T L       D  + +    M++K   Y+
Sbjct: 488 LKLFFDAANLLTSTTTIPTTNTFYHETWKIQTELARAATCEDPFISNLAKPMQEKVDKYW 547

Query: 479 KNIPPLYLVAIIFDPRCRMDVL-CDYLTIYYDVLNLDVEDNVNINVVMHEVKQNIMQLYN 537
           K+   +  +A+  DPR +M ++   +  IY D               +  V + + +L+ 
Sbjct: 548 KDCGLVLAIAVAMDPRFKMKLVEFSFPKIYGDEA---------APTCIRVVDEGLHELFL 598

Query: 538 EFXXXXXXXXXXXXXXXXNIPQFSTQRVSGVGVAQQVLLQRQKRTRESSSISEFDNYL-- 595
           E+                 +P   T    G   + +     Q     S+ +S+FD Y+  
Sbjct: 599 EYVALP-------------LPLTPTYVDEGNAGSMKGEDHSQGGLLSSNGLSDFDVYILE 645

Query: 596 TTSFEFS---DDYADA-------DFPILDWWSRHANTFPILSLLAKQILAAPVSTVAVEQ 645
           T+S +     D Y +        +F +L WW  +   +P LS +A+ IL+ PVS+VAVE 
Sbjct: 646 TSSQQMKSELDQYLEESVLPRVHEFDLLGWWKLNKLKYPTLSKMARDILSIPVSSVAVES 705

Query: 646 AFSQGGNILDETRSRMTPDSLEAQACVDDW 675
            +   G  +DE R+ + P+++EA  C  DW
Sbjct: 706 IYDTVGKEMDEYRNSLRPETVEALICAKDW 735


>GSVIVT01017364001 assembled CDS
          Length = 295

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 115/285 (40%), Gaps = 32/285 (11%)

Query: 411 NWEICAKILDILKIFNDATYKFSGVYYPTSNLFLPMCINIVTALQEF--QNDDLLKDCIF 468
           +W+    +   LK+  DA   F+G  YPT+N F      +   L E    +D  + +   
Sbjct: 3   DWKQVETLCTFLKLLFDAAIIFTGKTYPTANTFYHEVWKVQLELTEAAKSDDPFISNLTK 62

Query: 469 SMKKKWLSYFKNIPPLYLVAIIFDPRCRMDVLCDYLTIYYDVLNLDVEDNVNINVVMHEV 528
            ++ K+  Y+K+   +  +A++ DPR +M ++    +  Y              + +  V
Sbjct: 63  PLQDKFDRYWKDTSLVLAIAVVMDPRFKMKLVEFSFSKIY---------GAEAEMWIKIV 113

Query: 529 KQNIMQLYNEFXXXXXXXXXXXXXXXXNIPQFS-TQRVSGVGVAQQV-LLQRQKRTRESS 586
            + I +L+ ++                     S T    G  V  +  +        +S 
Sbjct: 114 DEGIRELFVDYVTQPPLLSIQPAYVEEGTEVISQTYMEEGTEVIPKTEMTDGGPLLSDSD 173

Query: 587 SISEFDNYLTTSFEFS---------DDYADA-------DFPILDWWSRHANTFPILSLLA 630
            +S+FD Y++   E S         D Y D        DF +L WW  +   +P LS +A
Sbjct: 174 RLSDFDVYIS---EISGGQDMRSELDQYLDESLMPRSQDFDVLAWWKLNKLKYPTLSRMA 230

Query: 631 KQILAAPVSTVAVEQAFSQGGNILDETRSRMTPDSLEAQACVDDW 675
             IL+ P++TV  +  F   G  +D  RS + P +LEA  C  DW
Sbjct: 231 SDILSIPITTVGPDNVFDTVGRKIDSYRSSLRPLTLEALICAKDW 275