Jatropha Genome Database

JcCB0029801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0029801.10 + phase: 2 /partial
         (126 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010737001 assembled CDS                                       226   3e-60
GSVIVT01019766001 assembled CDS                                       196   2e-51
GSVIVT01035981001 assembled CDS                                       190   2e-49
GSVIVT01019765001 assembled CDS                                       182   4e-47
GSVIVT01011101001 assembled CDS                                       175   5e-45

>GSVIVT01010737001 assembled CDS
          Length = 167

 Score =  226 bits (575), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 105/126 (83%), Positives = 118/126 (93%)

Query: 1   GLTQSNYKELNVLYEKYKSQGFEILAFPCNQFAGQEPGDSDKIQETACTLFKAEFPIFDK 60
           GLT SNYKELNVLYEKYKSQGFEILAFPCNQF GQEPG +++I E ACT+FKAEFPIFDK
Sbjct: 42  GLTHSNYKELNVLYEKYKSQGFEILAFPCNQFLGQEPGSNEEILEAACTMFKAEFPIFDK 101

Query: 61  IEVNGKNSAPLYKYLKSEKGGIFGDAIKWNFTKFLVNKEGKTVERYAPTTSPLKIEKDIQ 120
           +EVNGKN+APLYK+LK +KGG+FGD IKWNFTKFLV+KEGK V+RYAPTTSPLKIE+DIQ
Sbjct: 102 VEVNGKNTAPLYKFLKLQKGGLFGDGIKWNFTKFLVDKEGKVVDRYAPTTSPLKIEEDIQ 161

Query: 121 NLLGSS 126
           NLLGS+
Sbjct: 162 NLLGSA 167


>GSVIVT01019766001 assembled CDS
          Length = 168

 Score =  196 bits (499), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 91/126 (72%), Positives = 108/126 (85%)

Query: 1   GLTQSNYKELNVLYEKYKSQGFEILAFPCNQFAGQEPGDSDKIQETACTLFKAEFPIFDK 60
           GLT SNY EL+ LYEKYK QG EILAFPCNQF  QEPG +++I++  CT FKAE+PIFDK
Sbjct: 43  GLTNSNYTELHQLYEKYKDQGLEILAFPCNQFGAQEPGSNEEIEKFVCTRFKAEYPIFDK 102

Query: 61  IEVNGKNSAPLYKYLKSEKGGIFGDAIKWNFTKFLVNKEGKTVERYAPTTSPLKIEKDIQ 120
           I+VNG ++APLYK+LKS KGG+FGD IKWNF+KFLV+K+GK V+RYAPTTSPL IEKDI+
Sbjct: 103 IDVNGDSAAPLYKFLKSSKGGLFGDNIKWNFSKFLVDKDGKVVDRYAPTTSPLSIEKDIK 162

Query: 121 NLLGSS 126
            LLG S
Sbjct: 163 KLLGIS 168


>GSVIVT01035981001 assembled CDS
          Length = 207

 Score =  190 bits (482), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 87/125 (69%), Positives = 103/125 (82%)

Query: 1   GLTQSNYKELNVLYEKYKSQGFEILAFPCNQFAGQEPGDSDKIQETACTLFKAEFPIFDK 60
           GLT SNY EL+ +YEKYK+QGFEILAFPCNQF GQEPG + +I++ ACT FKAEFPIFDK
Sbjct: 83  GLTASNYSELSHIYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDK 142

Query: 61  IEVNGKNSAPLYKYLKSEKGGIFGDAIKWNFTKFLVNKEGKTVERYAPTTSPLKIEKDIQ 120
           ++VNG  +AP+Y++LKS  GG  GD IKWNF KFLV+K GK VERY PTTSP +IEKDIQ
Sbjct: 143 VDVNGPTTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYQPTTSPFQIEKDIQ 202

Query: 121 NLLGS 125
            LL +
Sbjct: 203 RLLAA 207


>GSVIVT01019765001 assembled CDS
          Length = 170

 Score =  182 bits (461), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 86/126 (68%), Positives = 102/126 (80%)

Query: 1   GLTQSNYKELNVLYEKYKSQGFEILAFPCNQFAGQEPGDSDKIQETACTLFKAEFPIFDK 60
           GLT SNY ELN LYEKYK QG EILAFPCNQF  +EPG +++I E  CT FK+EFP+FDK
Sbjct: 45  GLTNSNYTELNQLYEKYKDQGLEILAFPCNQFGEEEPGSNEQILEFVCTRFKSEFPVFDK 104

Query: 61  IEVNGKNSAPLYKYLKSEKGGIFGDAIKWNFTKFLVNKEGKTVERYAPTTSPLKIEKDIQ 120
           I+VNG+N+APLYK+LKS K GIFGD I+WNF KFLV+K GK V+RY PTTSPL +E D++
Sbjct: 105 IDVNGENAAPLYKFLKSGKWGIFGDDIQWNFGKFLVDKNGKIVDRYYPTTSPLTVENDVK 164

Query: 121 NLLGSS 126
            LL  S
Sbjct: 165 KLLEVS 170


>GSVIVT01011101001 assembled CDS
          Length = 170

 Score =  175 bits (443), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 80/124 (64%), Positives = 95/124 (76%)

Query: 1   GLTQSNYKELNVLYEKYKSQGFEILAFPCNQFAGQEPGDSDKIQETACTLFKAEFPIFDK 60
           GLT SNY +L  LY KYK +GFEILAFPCNQF  QEPG S++ QE ACT +KAE+PIF K
Sbjct: 45  GLTDSNYTQLTELYNKYKDRGFEILAFPCNQFLKQEPGSSEQAQEFACTRYKAEYPIFHK 104

Query: 61  IEVNGKNSAPLYKYLKSEKGGIFGDAIKWNFTKFLVNKEGKTVERYAPTTSPLKIEKDIQ 120
           + VNG ++AP+YK+LK+ K G  G  IKWNFTKFLV+KEG  + RY PTT+PL IE DIQ
Sbjct: 105 VRVNGPDAAPVYKFLKAHKSGFLGSRIKWNFTKFLVDKEGTVLARYGPTTAPLTIEADIQ 164

Query: 121 NLLG 124
             LG
Sbjct: 165 KALG 168