Jatropha Genome Database

JcCB0028581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028581.10 + phase: 2 /pseudo/partial
         (323 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013472001 assembled CDS                                       213   1e-55

>GSVIVT01013472001 assembled CDS
          Length = 752

 Score =  213 bits (542), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/232 (55%), Positives = 162/232 (69%), Gaps = 18/232 (7%)

Query: 108 FSLILPREDKVRLAKAEEKLIEDVRMLQQDVSSLRASLQ------------------RIF 149
            S++  REDK+RLAK EEKL E+V++L+Q+VS+ RASLQ                  RIF
Sbjct: 490 LSIVKSREDKLRLAKTEEKLSEEVQILRQEVSAARASLQELSSTKSSIQQEIASSKQRIF 549

Query: 150 FIDKRVPELESEKKVAASTRNFKEAARIAAEAKSLYVEKDGVQIDLERTTAELEKLEEDM 209
           FIDK VPELE+EKKVAA+ RNFKEAAR+AAEAK L VEK+G ++ ++    EL KLEE++
Sbjct: 550 FIDKIVPELEAEKKVAAAARNFKEAARVAAEAKKLSVEKEGEEVKMDGAMLELGKLEEEI 609

Query: 210 KNTVSRLLDTEHLISSKEKEVAMARFQRLLLIAGAATAERVSALELGDSXXXXXXXXXXX 269
           K+TV+ L++ + LI  KEKEVAMARFQRLLL+AGAA AER++A+ELGD            
Sbjct: 610 KDTVNWLVEADELILFKEKEVAMARFQRLLLVAGAAKAERLAAVELGDLEEANLLLAEAE 669

Query: 270 XXXXXXXXXQPIYNFNKEQFPNLPKHFISMELVFNLGRKQLADLAASVGISA 321
                    +  YNF +E+F NLPKHF+SMELV NLG KQLA+LAASV + A
Sbjct: 670 AAEVEAKNLEQSYNFKEEEFENLPKHFMSMELVSNLGGKQLAELAASVHLPA 721