Jatropha Genome Database

JcCB0028471.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028471.20 + phase: 0 /partial
         (54 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021865001 assembled CDS                                        83   2e-17
GSVIVT01009879001 assembled CDS                                        80   2e-16
GSVIVT01024465001 assembled CDS                                        54   2e-08
GSVIVT01036052001 assembled CDS                                        53   3e-08

>GSVIVT01021865001 assembled CDS
          Length = 1083

 Score = 83.2 bits (204), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/51 (76%), Positives = 42/51 (82%), Gaps = 4/51 (7%)

Query: 1  MGVPAFYRWLADRYPLAIVDVVEEEPKEDANGVSIPIDVSRPNPNGVEFDN 51
          MGVPAFYRWLADRYPLA++DVVEEEP E        IDVSRPNPNG+EFDN
Sbjct: 1  MGVPAFYRWLADRYPLAVMDVVEEEPSEGG----AEIDVSRPNPNGMEFDN 47


>GSVIVT01009879001 assembled CDS
          Length = 870

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 45/51 (88%), Gaps = 1/51 (1%)

Query: 1  MGVPAFYRWLADRYPLAIVDVVEEEPKEDANGVSIPIDVSRPNPNGVEFDN 51
          MGVPAFYRWLA++YPL +VDV+EEEP E  +G+SIP+D S+PNPN +E+DN
Sbjct: 1  MGVPAFYRWLAEKYPLVVVDVIEEEPVE-IDGISIPVDTSKPNPNNIEYDN 50


>GSVIVT01024465001 assembled CDS
          Length = 845

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 29/42 (69%), Gaps = 6/42 (14%)

Query: 1  MGVPAFYRWLADRYPLAIVDVVEEEPKE------DANGVSIP 36
          MG+PAFYRWLADRYPLA+V+ VE+ P        D NG+  P
Sbjct: 1  MGIPAFYRWLADRYPLAVVNAVEDRPAVFDNLYLDMNGIIHP 42


>GSVIVT01036052001 assembled CDS
          Length = 525

 Score = 52.8 bits (125), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 11/51 (21%)

Query: 1  MGVPAFYRWLADRYPLAIVDVVEEEPKEDANGVSIPIDVSRPNPNGVEFDN 51
          MGVP+FYRWL ++YP  +V  VE+E +            S  NPNG+EFDN
Sbjct: 1  MGVPSFYRWLVNKYPEIVVRAVEDERES-----------SSANPNGIEFDN 40