Jatropha Genome Database

JcCB0028391.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028391.20 + phase: 0 /partial
         (218 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027619001 assembled CDS                                       251   2e-67

>GSVIVT01027619001 assembled CDS
          Length = 518

 Score =  251 bits (640), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 113/133 (84%), Positives = 127/133 (95%)

Query: 85  APAYINPEPHISSQFYTFNAESHSLMIRCILEHRLATPDEIRAATPGSVLKSWRAVWKDR 144
           APAYI+PEPHIS+QFYTFN+ESH+LMIRCILE RLA+PDEIRAATP +VLKSWRAVWKDR
Sbjct: 86  APAYISPEPHISNQFYTFNSESHALMIRCILEGRLASPDEIRAATPRAVLKSWRAVWKDR 145

Query: 145 NEDTAYVTGWKRIQEKLTAQVDPASGNEFLCFKNNSQQFVSHINQWQDIVMSFHGDADLK 204
           NEDTAY+T WKRIQ+KLTA+VD A+GN+FLCFKNNSQQFVSHINQWQDIVMSFHGDADLK
Sbjct: 146 NEDTAYLTAWKRIQDKLTARVDAATGNQFLCFKNNSQQFVSHINQWQDIVMSFHGDADLK 205

Query: 205 HLGLRETIERINK 217
           HL ++ETIERI +
Sbjct: 206 HLAVKETIERIKQ 218