Jatropha Genome Database

JcCB0028271.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028271.30 + phase: 0 /partial
         (672 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013392001 assembled CDS                                       585   e-167
GSVIVT01023872001 assembled CDS                                       315   4e-86
GSVIVT01007243001 assembled CDS                                        81   2e-15
GSVIVT01037715001 assembled CDS                                        79   7e-15

>GSVIVT01013392001 assembled CDS
          Length = 996

 Score =  585 bits (1508), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 350/679 (51%), Positives = 412/679 (60%), Gaps = 66/679 (9%)

Query: 10  MDQFEAYFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWTYADQSRIGFLGRAEFYN 69
           M+ F+AYFRRADLDGDGRISGAEAVAFFQGSNL K VLAQ+W +AD +  GFLGRAEFYN
Sbjct: 1   MELFDAYFRRADLDGDGRISGAEAVAFFQGSNLAKHVLAQVWMHADPAGTGFLGRAEFYN 60

Query: 70  ALRLVTVAQTKRELTPDIVKAALYGXXXXXXXXXXXNLPATPVLHVPQVNPVVAASAPQM 129
           AL+LVTVAQ+KRELTPDIVKAALYG           NL A P    PQ N +    APQM
Sbjct: 61  ALKLVTVAQSKRELTPDIVKAALYGPAAAKIPAPQINLAAIP---SPQPNQMTTTPAPQM 117

Query: 130 GTVAPTASQNPGFRGPGVPNPGMNQHYFXXXXXXXXXXXXXXXXGASSHPPQGFISPEFS 189
           G VAPTASQN GFRG  +PNP  NQ YF                G++S PPQ    PE +
Sbjct: 118 GAVAPTASQNLGFRGQTLPNPSTNQQYFPSQQNQFMRPPQPMPAGSASRPPQNLAGPELN 177

Query: 190 RGGGMVGNSQAMPTGTAPRPSQAMPTSTAPRPSQLMPSSAPGTSIPTSNISTSWLGGKTS 249
           RGG MVG                                 PG  +P SNIS+ WL G+T+
Sbjct: 178 RGGNMVG---------------------------------PG--VPNSNISSDWLSGRTA 202

Query: 250 AAMTGP----------PSTPSATMQPRAQVSMPSQPTANDSKALVASGNGFSTHSSFGSD 299
            A TGP          PS P  T +P    S P        KA V SGNGF++   FG +
Sbjct: 203 GAPTGPLSQVPNRGITPSMPPPTTKPLDLASTP--------KAPVVSGNGFASDPVFGGN 254

Query: 300 GFSAISSTRKQDLSIPTY-STTGPSALATAVPASTGVHPPVKSNSLDSLQNAFATQPLGG 358
            FSA  + +K+D S  TY  ++ P++     PA TG     K +SLDSLQ+AF   P GG
Sbjct: 255 VFSATPTQQKRDSSGLTYSVSSSPASSVALSPAPTGSPSLSKPSSLDSLQSAFTMGPAGG 314

Query: 359 QLQRAQSLXXXXXXXXXXXXXXXXXXXXXXXIGNLSDN-SQLQWPKMKALDIQKYTKVFM 417
           Q+QRAQS                        +GN + N SQL WP+M   D+QKYTKVF+
Sbjct: 315 QIQRAQSAGNLNQPAPPQSTSPLSSSGVSVGVGNSASNQSQLPWPRMTPSDVQKYTKVFI 374

Query: 418 EVDTDRDGRITGEQARNLFLSWGLPREVLKQVWXXXXXXXXXXXXXREFCFALYLMEQYM 477
           EVD+DRDG+ITGEQARNLFLSW LPREVLKQVW             REFC ALYLME+Y 
Sbjct: 375 EVDSDRDGKITGEQARNLFLSWRLPREVLKQVWDLSDQDSDSMLSLREFCTALYLMERYR 434

Query: 478 AGRSLPSSLPSNVMLDETLLSMTGQPKVAYGNAAWGPRPGFGMQPGM-VTQPIAPATGLR 536
            GR LP+ LPSN++ DETL  M GQ + ++GNAA  P PG   Q G+   + +  A GL 
Sbjct: 435 EGRPLPAVLPSNILFDETLFPMMGQ-QASFGNAARPPTPGLSHQHGIPGVRQMTTAPGLG 493

Query: 537 PPVPVTAPQAKPDGVMISNQQKPRAPVLEDSFRNQSDEGVQNSL---PQDGTVSEKKVDE 593
           PP+ V     + DG M  NQQK    V ED F NQ   G +N L    QD T SEKKV+ 
Sbjct: 494 PPIQVA---LQGDGAMQPNQQKISGLVSEDVFGNQLSNGGKNGLNLTHQDVTDSEKKVEA 550

Query: 594 PEKVILDSKEKIEFYRTKMQDLVLYKSRCENKLNEITERALADKREAEMLGKKYEEKYKQ 653
            E VILDSKEKIE YRTKMQ+LVLYKSRC+N+LNEITERA +DKREAE + KKYEEKYKQ
Sbjct: 551 TENVILDSKEKIELYRTKMQELVLYKSRCDNRLNEITERASSDKREAEFVTKKYEEKYKQ 610

Query: 654 VAEVASKLTIEEATYREIQ 672
           VAE+ASKL +E+A +R++Q
Sbjct: 611 VAEIASKLAMEDARFRDLQ 629


>GSVIVT01023872001 assembled CDS
          Length = 875

 Score =  315 bits (808), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 181/366 (49%), Positives = 219/366 (59%), Gaps = 23/366 (6%)

Query: 322 PSALATAVPAS-------TGVHPPVK-SNSLDSLQNAFATQPL-GGQLQRAQSLXXXXXX 372
           PS L  +VP+        T + P  K S ++D   N FA++ + GG +  A         
Sbjct: 171 PSGLTASVPSKPQVSSGITSLEPAAKNSKAMDVTGNGFASESIFGGDVFSASPSQLKQDS 230

Query: 373 XXXXXXXXXXXXXXXXXIGNLSDNSQLQWPKMKALDIQKYTKVFMEVDTDRDGRITGEQA 432
                                S  SQL WP++   DIQKYTKVF+ VDTDRDG+ITGEQA
Sbjct: 231 SVHTSSSGNAPISSSIAPNTASSQSQLPWPRITQSDIQKYTKVFVAVDTDRDGKITGEQA 290

Query: 433 RNLFLSWGLPREVLKQVWXXXXXXXXXXXXXREFCFALYLMEQYMAGRSLPSSLPSNVML 492
           RNLFLSW LPREVLKQVW             REFC ALYLME+Y  GR LP+ LPS++  
Sbjct: 291 RNLFLSWRLPREVLKQVWDLSDQDNDSMLSLREFCTALYLMERYRDGRPLPAVLPSSIFA 350

Query: 493 DETLLSMTGQPKVAYGNAAWGPRPGFGMQPGMVT---QPIAPATGLRPPVPVTAPQAKPD 549
           D      T QP   YG+AAW P  G   Q GM     + + PA G RPP+P  A + K  
Sbjct: 351 D---FPTTVQPMAGYGSAAWRPPSGLQQQQGMPVSGARHVTPAMGGRPPLPHRADEGKQ- 406

Query: 550 GVMISNQQKPRAPVLEDSFRNQ---SDEGVQNSLPQDGTVSEKKVDEPEKVILDSKEKIE 606
               +NQQK + PVLE  F NQ    ++ + N+  ++   + KKV+E EK ILDSKEKIE
Sbjct: 407 ----TNQQKSKVPVLEKHFVNQLSKEEQDMLNTKFREAADANKKVEELEKEILDSKEKIE 462

Query: 607 FYRTKMQDLVLYKSRCENKLNEITERALADKREAEMLGKKYEEKYKQVAEVASKLTIEEA 666
           F RTKMQ+LVLYKSRC+N+LNEI ER  ADKREAE L KKYEEKYKQ  +VASKLTIEEA
Sbjct: 463 FCRTKMQELVLYKSRCDNRLNEIIERVAADKREAEALAKKYEEKYKQSGDVASKLTIEEA 522

Query: 667 TYREIQ 672
           T+R+IQ
Sbjct: 523 TFRDIQ 528



 Score =  190 bits (483), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 137/336 (40%), Positives = 175/336 (52%), Gaps = 90/336 (26%)

Query: 2   AGQPQGPNMDQFEAYFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWTYADQSRIGF 61
           A Q Q PN+D F+AYFRRADLD DGRISG+EAVAFFQ +NLPK VLAQIWTYAD +RIGF
Sbjct: 3   AAQNQAPNVDLFDAYFRRADLDRDGRISGSEAVAFFQTTNLPKHVLAQIWTYADHNRIGF 62

Query: 62  LGRAEFYNALRLVTVAQTKRELTPDIVKAALYGXXXXXXXXXXXNLPATPVLHVPQVNPV 121
           LGRAEFYNAL+LVTVAQ+KRELTPDIVKAALYG             PA   +  PQ+N  
Sbjct: 63  LGRAEFYNALKLVTVAQSKRELTPDIVKAALYG-------------PAAAKIPAPQIN-- 107

Query: 122 VAASAPQMGTVAPTASQNPGFRGPGVPNPGMNQHYFXXXXXXXXXXXXXXXXGASSHPPQ 181
           +AA+  QM T AP  +              M   YF                     PPQ
Sbjct: 108 LAAAPTQMNTAAPAPAPA------PASVAPMGSQYF---------------------PPQ 140

Query: 182 GFISPEFSRGGGMVGNSQAMPTGTAPRPSQAMPTSTAPRPSQLMPSSAPGTSIPTSNIST 241
           G               +Q M      RP+Q +P                   +P   +S 
Sbjct: 141 G---------------NQLM------RPTQTLP-------------------VPIRGVSP 160

Query: 242 SWLGGKTSAAMTGPPSTPSATMQPRAQVS---MPSQPTANDSKALVASGNGFSTHSSFGS 298
           S     +       PS  +A++  + QVS      +P A +SKA+  +GNGF++ S FG 
Sbjct: 161 S----MSQDGFGVSPSGLTASVPSKPQVSSGITSLEPAAKNSKAMDVTGNGFASESIFGG 216

Query: 299 DGFSAISSTRKQDLSIPTYSTTGPSALATAVPASTG 334
           D FSA  S  KQD S+ T S++G + +++++  +T 
Sbjct: 217 DVFSASPSQLKQDSSVHT-SSSGNAPISSSIAPNTA 251


>GSVIVT01007243001 assembled CDS
          Length = 575

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 51/81 (62%)

Query: 9  NMDQFEAYFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWTYADQSRIGFLGRAEFY 68
          N   ++ +F  AD D DGRI+G +A  FF  SNL +  L Q+W  AD  R GFLG  EF 
Sbjct: 15 NQKIYQEWFNYADSDNDGRITGNDATKFFAMSNLSRSELKQVWAIADSKRQGFLGFREFI 74

Query: 69 NALRLVTVAQTKRELTPDIVK 89
           A++LV++AQ   E+T DI+K
Sbjct: 75 TAMQLVSLAQAGNEITSDILK 95


>GSVIVT01037715001 assembled CDS
          Length = 545

 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 52/80 (65%)

Query: 13 FEAYFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWTYADQSRIGFLGRAEFYNALR 72
          ++ +F  AD D DGRI+G +A+ FF  SNLP+  L Q+W  AD  R GFLG  EF  A++
Sbjct: 19 YQEWFNFADSDSDGRITGNDAIKFFAMSNLPRPDLKQVWAIADTKRQGFLGLKEFITAMQ 78

Query: 73 LVTVAQTKRELTPDIVKAAL 92
          LV++AQ    +T D++ + +
Sbjct: 79 LVSLAQAGHAITQDLLHSEV 98