Jatropha Genome Database

JcCB0028271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028271.10 - phase: 0 /pseudo/partial
         (177 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013389001 assembled CDS                                       186   5e-48
GSVIVT01017108001 assembled CDS                                        80   6e-16
GSVIVT01017082001 assembled CDS                                        55   2e-08

>GSVIVT01013389001 assembled CDS
          Length = 1218

 Score =  186 bits (472), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 82/103 (79%), Positives = 96/103 (93%)

Query: 19  VYHIGGIQVEFPYQPYGTQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSTL 78
           VYHIGGI VEFPYQPYG+QLAFMGRVISTLDRAQR+GHCHALLESPTGTGKSLSLLCS L
Sbjct: 13  VYHIGGIAVEFPYQPYGSQLAFMGRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSAL 72

Query: 79  AWQQNYKFKYQHANLTPSKPNPEAMTDPLGHGGGFIPETQPSS 121
           AWQ+NY+ K  + +++ SKP+PEA++DPLGHGGGF+PET+PS+
Sbjct: 73  AWQKNYRPKNMNGDVSNSKPDPEALSDPLGHGGGFVPETEPST 115


>GSVIVT01017108001 assembled CDS
          Length = 777

 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 48/65 (73%), Gaps = 5/65 (7%)

Query: 19 VYHIGGIQVEFPYQPYGTQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSTL 78
          +Y I GI V+FP++ Y  QL +M +VI +L     +  C+ALLESPTGTGK+L LLC+TL
Sbjct: 3  IYKIRGIDVDFPFEAYDCQLVYMEKVIQSL-----QERCNALLESPTGTGKTLCLLCATL 57

Query: 79 AWQQN 83
          AW++N
Sbjct: 58 AWRKN 62


>GSVIVT01017082001 assembled CDS
          Length = 826

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 5/57 (8%)

Query: 29 FPYQPYGTQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSTLAWQQNYK 85
          FPY+PY  Q+ FM  +  +L++        ++LESPTGTGK+LS++CS L W  + K
Sbjct: 12 FPYEPYSIQIDFMKALYRSLNKGGV-----SMLESPTGTGKTLSIICSALQWLVDRK 63