Jatropha Genome Database

JcCB0028241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028241.10 + phase: 0 
         (250 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036445001 assembled CDS                                       301   1e-82
GSVIVT01011944001 assembled CDS                                       267   3e-72

>GSVIVT01036445001 assembled CDS
          Length = 251

 Score =  301 bits (772), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 155/257 (60%), Positives = 191/257 (74%), Gaps = 13/257 (5%)

Query: 1   MACTTSPLKTAAYFARLSNKTSPTITKSLRLPSMPANPSLSFSSKTSIFNNRINNT-FSV 59
           MA +T  L+  +   +L N  S + T + RL  +P      FS+ +   N  +++T +S 
Sbjct: 1   MASSTPALRNFSSSFKLLNPRSVSSTPAHRL--LP----FKFSNPSPSHNLTLHSTHYSF 54

Query: 60  PKR----SFSCKSQAS--DDSTPSKFQELHVYEINERDRGSPAYLRLSQKEVNSLGDLVP 113
           PK     SFSCK+Q+S  D   P+K QELHVYEINERDRGSPAYLRLSQK VNSLGDLVP
Sbjct: 55  PKPARSISFSCKAQSSPSDPPRPTKVQELHVYEINERDRGSPAYLRLSQKSVNSLGDLVP 114

Query: 114 FSNKLYTGDLQKRIGITAGICILIEHKAEKKGDRYEAIYSFYFGDYGHIAVQGAYLTYED 173
           FSNK+YTGDL+KR+G+TAG+C+LI++   KKGDRYEA YSFYFGDYGHI+VQGAYLTYED
Sbjct: 115 FSNKIYTGDLEKRLGVTAGLCVLIQNVPGKKGDRYEATYSFYFGDYGHISVQGAYLTYED 174

Query: 174 SYLAVTGGTGIFEGVSGQVKLRQLIFPFKLFYTFYLKGIKDLPEELVGKXXXXXXXXXXX 233
           +YLA+TGG+GIFEG  GQVKL+Q++FPFKLFYTFYLKGIK+LP +L+GK           
Sbjct: 175 TYLAITGGSGIFEGAYGQVKLQQIVFPFKLFYTFYLKGIKELPADLLGKPVSPSPNVEPA 234

Query: 234 XXXKACQPHAALVNFTD 250
              KAC+PHA + NFTD
Sbjct: 235 PSAKACEPHACIANFTD 251


>GSVIVT01011944001 assembled CDS
          Length = 254

 Score =  267 bits (683), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 121/170 (71%), Positives = 144/170 (84%)

Query: 80  QELHVYEINERDRGSPAYLRLSQKEVNSLGDLVPFSNKLYTGDLQKRIGITAGICILIEH 139
           QEL+VYEINERDR SPA+L+LSQK  NSLGDLVPF+NK+YTGDL+KR+G+TAGIC+LI+H
Sbjct: 84  QELYVYEINERDRDSPAFLKLSQKPANSLGDLVPFTNKIYTGDLEKRLGVTAGICVLIQH 143

Query: 140 KAEKKGDRYEAIYSFYFGDYGHIAVQGAYLTYEDSYLAVTGGTGIFEGVSGQVKLRQLIF 199
             E+KGDRYEAIYSFYFGDYGH++VQG YLTYED+YLAVTGG+GIFEGV G+VKL+Q++F
Sbjct: 144 VRERKGDRYEAIYSFYFGDYGHVSVQGPYLTYEDTYLAVTGGSGIFEGVYGEVKLQQIVF 203

Query: 200 PFKLFYTFYLKGIKDLPEELVGKXXXXXXXXXXXXXXKACQPHAALVNFT 249
           PFKLFYTFYLKGI DLP +L+GK              KA  PHA++ NFT
Sbjct: 204 PFKLFYTFYLKGIPDLPHDLMGKPVTPSPTVEPSPAAKATLPHASVKNFT 253