Jatropha Genome Database

JcCB0027861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0027861.10 - phase: 0 /pseudo/partial
         (399 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031917001 assembled CDS                                       477   e-135
GSVIVT01019024001 assembled CDS                                       474   e-134

>GSVIVT01031917001 assembled CDS
          Length = 435

 Score =  477 bits (1227), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/364 (64%), Positives = 260/364 (71%), Gaps = 39/364 (10%)

Query: 41  SGHXXXXXXXXXXXXXXXXXXTECGVDFDEDPSAMVIDHKSYAVSKTEGDHTLIAADSFI 100
           SGH                  TECGV+FDEDP+AMVIDH S+AVS TEGDHTLI +D FI
Sbjct: 106 SGHDLIMSADVSASDLIREIATECGVEFDEDPAAMVIDHTSFAVSDTEGDHTLIVSDDFI 165

Query: 101 ESDVILGKTKIEAPVLFKGIAHSINAANGLALKVLXXXXXXXXXXXXXXXXXXXXXXXXA 160
           +SDVILGK KIEAPVLF+GI HS N AN L LK L                        A
Sbjct: 166 KSDVILGKEKIEAPVLFRGIGHSTNPANSLVLKALSASPAAYSANPKSKLSNPPSLTGSA 225

Query: 161 ISLVSVVQARNNARILITGSLDMFSNRFFKSGVQKAESTTKYEKSGNEQFVTELSKWIFH 220
           ISLVSVVQARNNAR+LI+GSL MFSNR F+SGVQKA S+TK+EKSGNEQF+TELS+W+FH
Sbjct: 226 ISLVSVVQARNNARVLISGSLSMFSNRLFRSGVQKAGSSTKHEKSGNEQFLTELSRWVFH 285

Query: 221 ERGHLKAVNLGHHKVGETDEPAIYRIKDDL-----VYEWSGKSWEPYVANDVQVQFYMMS 275
           ERGHLKAVN+ HH VGE DEP++YRIKDDL     +YEWSG SWEPY+A DVQVQFYMMS
Sbjct: 286 ERGHLKAVNVSHHNVGEADEPSMYRIKDDLEYSVEIYEWSGTSWEPYIAEDVQVQFYMMS 345

Query: 276 PYVLKTLSTDQKGLYHTSFKVPDVYGVFQFKVEYQRLGYTSLSLSKQIPVRPFRHNEYER 335
           PYVLKTLST+QKGLY+T+FKVPDVYGVFQFKVEYQRLGYTSLSLSKQIPVRPFRHNEYER
Sbjct: 346 PYVLKTLSTNQKGLYYTAFKVPDVYGVFQFKVEYQRLGYTSLSLSKQIPVRPFRHNEYER 405

Query: 336 FITTAYPYYGASFATVLSHSLVKIKLLLMFVDVGGLVCALAKHFLLLLQMAGFFIFSFVY 395
           FIT A+PYYG+SF                                    MAGFFIFS VY
Sbjct: 406 FITAAFPYYGSSFT----------------------------------MMAGFFIFSIVY 431

Query: 396 LYNK 399
           LYNK
Sbjct: 432 LYNK 435


>GSVIVT01019024001 assembled CDS
          Length = 435

 Score =  474 bits (1219), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/364 (65%), Positives = 260/364 (71%), Gaps = 39/364 (10%)

Query: 41  SGHXXXXXXXXXXXXXXXXXXTECGVDFDEDPSAMVIDHKSYAVSKTEGDHTLIAADSFI 100
           SGH                  TECGVDFDEDPSAMVIDH SYAVS TEGDHTLIA+D FI
Sbjct: 106 SGHDLIITTDASASGLIRSIATECGVDFDEDPSAMVIDHTSYAVSDTEGDHTLIASDDFI 165

Query: 101 ESDVILGKTKIEAPVLFKGIAHSINAANGLALKVLXXXXXXXXXXXXXXXXXXXXXXXXA 160
           +SDVILG T IEAPVL+KGI HS+N+AN L LKVL                        A
Sbjct: 166 QSDVILGSTTIEAPVLYKGIGHSLNSANSLVLKVLSASPSAYSADPNSKLSSPPLLTGLA 225

Query: 161 ISLVSVVQARNNARILITGSLDMFSNRFFKSGVQKAESTTKYEKSGNEQFVTELSKWIFH 220
           ISLVSVVQARNNARI+I+GSL+MFSNR F+S  QKA S+ +YEKSGNEQFVTELSKWIFH
Sbjct: 226 ISLVSVVQARNNARIMISGSLEMFSNRLFQSSAQKAGSSNRYEKSGNEQFVTELSKWIFH 285

Query: 221 ERGHLKAVNLGHHKVGETDEPAIYRIKDDL-----VYEWSGKSWEPYVANDVQVQFYMMS 275
           ERGHLKA N+ HHKVGETDEPA+YRI DDL     ++EWSGKSWEPYV+NDVQ+QFYMMS
Sbjct: 286 ERGHLKAANVRHHKVGETDEPAMYRINDDLEYSVEIHEWSGKSWEPYVSNDVQIQFYMMS 345

Query: 276 PYVLKTLSTDQKGLYHTSFKVPDVYGVFQFKVEYQRLGYTSLSLSKQIPVRPFRHNEYER 335
           PYVLKTLS+DQKG Y TSFKVPDVYGVFQFKVEYQRLGYTSLSL KQIPVRPF+HNEYER
Sbjct: 346 PYVLKTLSSDQKGKYFTSFKVPDVYGVFQFKVEYQRLGYTSLSLLKQIPVRPFKHNEYER 405

Query: 336 FITTAYPYYGASFATVLSHSLVKIKLLLMFVDVGGLVCALAKHFLLLLQMAGFFIFSFVY 395
           FI TA+PYYGASF+                                   MAGFFIF+ VY
Sbjct: 406 FIKTAFPYYGASFSA----------------------------------MAGFFIFTIVY 431

Query: 396 LYNK 399
           LY K
Sbjct: 432 LYYK 435