Jatropha Genome Database

JcCB0027381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0027381.10 - phase: 0 /partial
         (137 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035970001 assembled CDS                                       216   4e-57
GSVIVT01023607001 assembled CDS                                       202   3e-53
GSVIVT01016851001 assembled CDS                                       179   5e-46
GSVIVT01001034001 assembled CDS                                       117   2e-27
GSVIVT01030146001 assembled CDS                                       102   6e-23
GSVIVT01011055001 assembled CDS                                       102   6e-23
GSVIVT01036130001 assembled CDS                                        72   9e-14
GSVIVT01011574001 assembled CDS                                        62   7e-11
GSVIVT01023343001 assembled CDS                                        58   1e-09
GSVIVT01026057001 assembled CDS                                        48   1e-06

>GSVIVT01035970001 assembled CDS
          Length = 638

 Score =  216 bits (549), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 93/115 (80%), Positives = 106/115 (92%)

Query: 21  FLILIHGGHCFYLPGVAPEDFVKGDELKVKVNKLTSTKTQLPYSYYSLPYCRPTKIVDSA 80
            L+LIH  HCFYLPGV+P+DF KGD LKVKVNKLTSTKTQLPY+YYSLPYCRP KIVD+A
Sbjct: 15  LLLLIHASHCFYLPGVSPQDFQKGDPLKVKVNKLTSTKTQLPYTYYSLPYCRPGKIVDNA 74

Query: 81  ENLGEVLRGDRIENSPYVFKMREQKMCNIVCRLKLDAKTVKEFKERIDDEYRVNM 135
           ENLGEVLRGDRIENSPYVFKMRE ++CN++C LKL+AKT K+FKE+I+DEYRVNM
Sbjct: 75  ENLGEVLRGDRIENSPYVFKMREPQLCNVICHLKLNAKTAKDFKEKIEDEYRVNM 129


>GSVIVT01023607001 assembled CDS
          Length = 413

 Score =  202 bits (515), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 100/132 (75%), Positives = 111/132 (84%), Gaps = 2/132 (1%)

Query: 5   GGRSL-PLSATICAALAFLILIHGGHCFYLPGVAPEDFVKGDELKVKVNKLTSTKTQLPY 63
           GGR L P +  +   L+ L+  H    FYLPGVAP+DF KGD LKVKVNKLTSTKTQLPY
Sbjct: 7   GGRRLGPFALHLWIFLSLLLFPHV-RSFYLPGVAPQDFNKGDPLKVKVNKLTSTKTQLPY 65

Query: 64  SYYSLPYCRPTKIVDSAENLGEVLRGDRIENSPYVFKMREQKMCNIVCRLKLDAKTVKEF 123
           SYYSLPYCRP  IVDSAENLGEVLRGDRIENSPYVFKMRE +MCN+VCR++L+AKT KEF
Sbjct: 66  SYYSLPYCRPETIVDSAENLGEVLRGDRIENSPYVFKMREPQMCNVVCRMELNAKTAKEF 125

Query: 124 KERIDDEYRVNM 135
           KE+IDDEYRVNM
Sbjct: 126 KEKIDDEYRVNM 137


>GSVIVT01016851001 assembled CDS
          Length = 634

 Score =  179 bits (453), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 78/115 (67%), Positives = 94/115 (81%)

Query: 21  FLILIHGGHCFYLPGVAPEDFVKGDELKVKVNKLTSTKTQLPYSYYSLPYCRPTKIVDSA 80
           F++LI   H FYLPGVAP DF +GD L+VKVNKL+STKTQLPY YY L +C+P KI++SA
Sbjct: 11  FVLLISSAHSFYLPGVAPRDFERGDPLQVKVNKLSSTKTQLPYDYYYLKWCKPKKIMNSA 70

Query: 81  ENLGEVLRGDRIENSPYVFKMREQKMCNIVCRLKLDAKTVKEFKERIDDEYRVNM 135
           ENLGEVLRGDRIENS Y F+MRE + C + CR+ L+A+  K FKE+IDDEYRVNM
Sbjct: 71  ENLGEVLRGDRIENSIYTFQMREGQPCKVACRMHLNAEAAKNFKEKIDDEYRVNM 125


>GSVIVT01001034001 assembled CDS
          Length = 545

 Score =  117 bits (292), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/115 (50%), Positives = 77/115 (66%), Gaps = 2/115 (1%)

Query: 23  ILIHGGHCFYLPGVAPEDFVKGDELKVKVNKLTSTKTQLPYSYYSLPYCRPTK-IVDSAE 81
           ++   G  FYLPG  P  +  G+ L VKVN LTS  T++P+SYYSLP+C+P + + DSAE
Sbjct: 16  LVFQCGCGFYLPGSYPHKYDIGNTLSVKVNSLTSIDTEMPFSYYSLPFCKPPEGVKDSAE 75

Query: 82  NLGEVLRGDRIENSPYVFKMREQKMCNIVCRLK-LDAKTVKEFKERIDDEYRVNM 135
           NLGE+L GDRIENSPY FKM   +    +C+   L A   K  K+RID+ Y+VN+
Sbjct: 76  NLGELLMGDRIENSPYRFKMYTNETQIFLCKSDPLSADDFKILKKRIDEMYQVNL 130


>GSVIVT01030146001 assembled CDS
          Length = 321

 Score =  102 bits (254), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 71/117 (60%), Gaps = 3/117 (2%)

Query: 21  FLILIHGGHC--FYLPGVAPEDFVKGDELKVKVNKLTSTKTQLPYSYYSLPYCRPTK-IV 77
           FL+ +    C  FYLPG     +  G+ +  KVN LTS +T+LP+SYYSLPYC+P   I 
Sbjct: 25  FLVFLFAHECRGFYLPGSYMHTYSTGEPILAKVNSLTSIETELPFSYYSLPYCKPVAGIK 84

Query: 78  DSAENLGEVLRGDRIENSPYVFKMREQKMCNIVCRLKLDAKTVKEFKERIDDEYRVN 134
            SAENLGE+L GD+I+NSPY F+M   +   +     L+   VK  K+R  D Y++ 
Sbjct: 85  KSAENLGELLMGDQIDNSPYRFRMNVNETIYLCTTSPLNEHDVKLLKQRTRDLYQIT 141


>GSVIVT01011055001 assembled CDS
          Length = 664

 Score =  102 bits (254), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/106 (49%), Positives = 67/106 (63%), Gaps = 2/106 (1%)

Query: 31  FYLPGVAPEDFVKGDELKVKVNKLTSTKTQLPYSYYSLPYCRPTK-IVDSAENLGEVLRG 89
           FYLPG  P  +  GD L VKVN LTS +T++PY YY+LP+C+P   + +S ENLGE+L G
Sbjct: 29  FYLPGSYPHRYGDGDLLSVKVNSLTSIETEMPYGYYTLPFCKPIDGVQNSRENLGELLMG 88

Query: 90  DRIENSPYVFKMREQKMCNIVCRL-KLDAKTVKEFKERIDDEYRVN 134
           DRIE+SPY FK    +    VC    L  +  +  K RID  Y+VN
Sbjct: 89  DRIESSPYRFKSYVNETDVFVCSTGPLSKEEARIMKLRIDQVYQVN 134


>GSVIVT01036130001 assembled CDS
          Length = 636

 Score = 72.0 bits (175), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 1/107 (0%)

Query: 31  FYLPGVAPEDFVKGDELKVKVNKLTS-TKTQLPYSYYSLPYCRPTKIVDSAENLGEVLRG 89
           F  P      +  GD + + VNK+         Y YY LP+CRP +++    +LGEVL G
Sbjct: 67  FVTPLAQDHRYNVGDHVSLFVNKVGPLNNPSETYHYYDLPFCRPDQVIRRKASLGEVLNG 126

Query: 90  DRIENSPYVFKMREQKMCNIVCRLKLDAKTVKEFKERIDDEYRVNMY 136
           D + N+ Y  K RE K+   +C+ KL    V +F+  + +++   MY
Sbjct: 127 DCLTNALYELKFRENKIGETLCQKKLKGDEVAKFRNAVSNDFYFQMY 173


>GSVIVT01011574001 assembled CDS
          Length = 591

 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 42/74 (56%)

Query: 63  YSYYSLPYCRPTKIVDSAENLGEVLRGDRIENSPYVFKMREQKMCNIVCRLKLDAKTVKE 122
           Y Y+ LP+C P  + +  E LGEVL GDR+ ++PY      +K   +VC+ KL  + V +
Sbjct: 53  YRYFDLPFCVPAHLKEKKEALGEVLNGDRLVSAPYKLDFLREKDSEVVCKKKLKKEEVAQ 112

Query: 123 FKERIDDEYRVNMY 136
           F+  +  +Y   MY
Sbjct: 113 FRAAVAKDYYFQMY 126


>GSVIVT01023343001 assembled CDS
          Length = 592

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 51  VNKLTS-TKTQLPYSYYSLPYCRPT-KIVDSAENLGEVLRGDRIENSPYVFKMREQKMCN 108
           VNK+      Q  Y+YYSLP+CRP  K V     LGE+L G+ +  S    K ++     
Sbjct: 45  VNKVGPYNNPQETYNYYSLPFCRPPGKAVHKWIGLGELLGGNELIESQIDIKFQKNVDKG 104

Query: 109 IVCRLKLDAKTVKEFKERIDDEYRVNMY 136
           ++C+L+LD   VK+FK+ I++ Y +  +
Sbjct: 105 VICQLELDEAKVKQFKDAIENNYWLEFF 132


>GSVIVT01026057001 assembled CDS
          Length = 749

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 45  DELKVKVNKLTS-TKTQLPYSYYSLPYCRPTKIVDSA-ENLGEVLRGDRIENSPYVFKMR 102
           +++ + VNK+      Q  Y+Y+SLP+C P          LGEVL G+ + +S    K +
Sbjct: 195 EQVTLWVNKVGPYNNPQETYNYFSLPFCHPPGNAGHKWGGLGEVLGGNELIDSQIDMKFK 254

Query: 103 EQKMCNIVCRLKLDAKTVKEFKERIDDEY 131
           +      +C ++LDA  VK+F++ I   Y
Sbjct: 255 KNVERTTICIIELDAAKVKQFRDAIGKSY 283