Jatropha Genome Database

JcCB0027191.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0027191.20 - phase: 0 /short
         (43 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011946001 assembled CDS                                        82   3e-17
GSVIVT01022146001 assembled CDS                                        62   4e-11
GSVIVT01027655001 assembled CDS                                        54   1e-08

>GSVIVT01011946001 assembled CDS
          Length = 368

 Score = 82.4 bits (202), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/42 (85%), Positives = 40/42 (95%)

Query: 1   MGSTECLTWPDNWTTLTADGSPAAQFEHTILITRTGAEILTK 42
           +GSTEC+TW DNWTT+TADG PAAQFEHTILITRTGAE+LTK
Sbjct: 326 IGSTECITWSDNWTTVTADGFPAAQFEHTILITRTGAEVLTK 367


>GSVIVT01022146001 assembled CDS
          Length = 350

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 32/42 (76%)

Query: 1   MGSTECLTWPDNWTTLTADGSPAAQFEHTILITRTGAEILTK 42
           +GS   + W DNWT +T DGS +AQFEHTILIT  GAEILT+
Sbjct: 308 IGSINPIMWDDNWTVVTEDGSLSAQFEHTILITENGAEILTQ 349


>GSVIVT01027655001 assembled CDS
          Length = 398

 Score = 53.9 bits (128), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 27/33 (81%)

Query: 9   WPDNWTTLTADGSPAAQFEHTILITRTGAEILT 41
           WPD WT +TADG  +AQFEHT+L+T TG E+LT
Sbjct: 351 WPDGWTAVTADGKRSAQFEHTLLVTETGVEVLT 383