Jatropha Genome Database

JcCB0027191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0027191.10 - phase: 0 
         (258 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011944001 assembled CDS                                       281   2e-76
GSVIVT01036445001 assembled CDS                                       261   2e-70

>GSVIVT01011944001 assembled CDS
          Length = 254

 Score =  281 bits (719), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 155/258 (60%), Positives = 180/258 (69%), Gaps = 6/258 (2%)

Query: 1   MAFTSSLTAISSFKLTNPTSHFLPSDRSLKQQGLFHQQNQSLSTQNFKFSIP-QHFSTRR 59
           MA TS L  ISS KL +P S   P  +S K  G     + S  TQN K S   Q  S+ R
Sbjct: 1   MASTSFLKPISSLKLPHPRS---PPFQSSKLLGF--DLSNSFPTQNLKSSTAHQRLSSTR 55

Query: 60  CSPKSIVTTAFFSKLCSESPKRKPAGKVQQLNVYEINERDRDSPAILKLSKKPELALGDL 119
               +  TTAFF      +PK     KVQ+L VYEINERDRDSPA LKLS+KP  +LGDL
Sbjct: 56  RHSSATTTTAFFFNHHKTTPKPPTPTKVQELYVYEINERDRDSPAFLKLSQKPANSLGDL 115

Query: 120 VPFTNKLYSGDLQKRFGITAGLCVLIQHVPEKNGDRYEANYSFYFGDYGHISVQGAYLTY 179
           VPFTNK+Y+GDL+KR G+TAG+CVLIQHV E+ GDRYEA YSFYFGDYGH+SVQG YLTY
Sbjct: 116 VPFTNKIYTGDLEKRLGVTAGICVLIQHVRERKGDRYEAIYSFYFGDYGHVSVQGPYLTY 175

Query: 180 QDTFLAVTGGSGIFEGVYGQVKLQQIVFPYKLFYTFYLKGIPDLPAELLGXXXXXXXXXX 239
           +DT+LAVTGGSGIFEGVYG+VKLQQIVFP+KLFYTFYLKGIPDLP +L+G          
Sbjct: 176 EDTYLAVTGGSGIFEGVYGEVKLQQIVFPFKLFYTFYLKGIPDLPHDLMGKPVTPSPTVE 235

Query: 240 XXXXXXXXQPNATILNFT 257
                    P+A++ NFT
Sbjct: 236 PSPAAKATLPHASVKNFT 253


>GSVIVT01036445001 assembled CDS
          Length = 251

 Score =  261 bits (668), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 148/256 (57%), Positives = 170/256 (66%), Gaps = 25/256 (9%)

Query: 11  SSFKLTNPTS-HFLPSDRSLKQQGLFHQQNQSLSTQNFKFSIPQH------FSTRRCSPK 63
           SSFKL NP S    P+ R L                 FKFS P         ST    PK
Sbjct: 13  SSFKLLNPRSVSSTPAHRLLP----------------FKFSNPSPSHNLTLHSTHYSFPK 56

Query: 64  SIVTTAFFSKLCSESPKRKP-AGKVQQLNVYEINERDRDSPAILKLSKKPELALGDLVPF 122
              + +F  K  S SP   P   KVQ+L+VYEINERDR SPA L+LS+K   +LGDLVPF
Sbjct: 57  PARSISFSCKAQS-SPSDPPRPTKVQELHVYEINERDRGSPAYLRLSQKSVNSLGDLVPF 115

Query: 123 TNKLYSGDLQKRFGITAGLCVLIQHVPEKNGDRYEANYSFYFGDYGHISVQGAYLTYQDT 182
           +NK+Y+GDL+KR G+TAGLCVLIQ+VP K GDRYEA YSFYFGDYGHISVQGAYLTY+DT
Sbjct: 116 SNKIYTGDLEKRLGVTAGLCVLIQNVPGKKGDRYEATYSFYFGDYGHISVQGAYLTYEDT 175

Query: 183 FLAVTGGSGIFEGVYGQVKLQQIVFPYKLFYTFYLKGIPDLPAELLGXXXXXXXXXXXXX 242
           +LA+TGGSGIFEG YGQVKLQQIVFP+KLFYTFYLKGI +LPA+LLG             
Sbjct: 176 YLAITGGSGIFEGAYGQVKLQQIVFPFKLFYTFYLKGIKELPADLLGKPVSPSPNVEPAP 235

Query: 243 XXXXXQPNATILNFTQ 258
                +P+A I NFT 
Sbjct: 236 SAKACEPHACIANFTD 251