Jatropha Genome Database

JcCB0027181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0027181.10 + phase: 0 /partial
         (124 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008429001 assembled CDS                                       211   8e-56
GSVIVT01011715001 assembled CDS                                       177   1e-45
GSVIVT01011713001 assembled CDS                                       131   9e-32

>GSVIVT01008429001 assembled CDS
          Length = 491

 Score =  211 bits (536), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 102/123 (82%), Positives = 113/123 (91%)

Query: 2   EHSVDLTVEAMMLDSKASDLDKEERPEVLSMLPSYEGKSVLEFGAGIGRFTGEIAQNAGQ 61
           EHS DLTVEAMMLDSKA+DLDKEERPEVLS+LP +EGKSVLE GAGIGRFTGE+AQ AGQ
Sbjct: 18  EHSADLTVEAMMLDSKAADLDKEERPEVLSLLPPFEGKSVLELGAGIGRFTGELAQKAGQ 77

Query: 62  LVALDFIDSVIKKNESINGHYKNVKFICADVTSQDLKFSEGSVDLIFSNWLLMYLSDKEV 121
           +++LDFI+SVIKKNESINGHYKNVKF+CADV S +L FS  SVDLIFSNWLLMYLSDKEV
Sbjct: 78  VISLDFIESVIKKNESINGHYKNVKFMCADVASPELNFSAESVDLIFSNWLLMYLSDKEV 137

Query: 122 KIL 124
           + L
Sbjct: 138 EEL 140


>GSVIVT01011715001 assembled CDS
          Length = 475

 Score =  177 bits (448), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/124 (75%), Positives = 110/124 (88%)

Query: 1   MEHSVDLTVEAMMLDSKASDLDKEERPEVLSMLPSYEGKSVLEFGAGIGRFTGEIAQNAG 60
           MEHS +LTVEAMMLDS+ASDLDKEERPE+LS+LP  EGK V+E GAGIGRFTGE+A+ AG
Sbjct: 1   MEHSAELTVEAMMLDSQASDLDKEERPELLSLLPPLEGKYVVELGAGIGRFTGELAKQAG 60

Query: 61  QLVALDFIDSVIKKNESINGHYKNVKFICADVTSQDLKFSEGSVDLIFSNWLLMYLSDKE 120
           Q++A+DFI+SVI++NE ING +KN KF+CADVTS DL  S GSVDLIFSNWLLMYLSDKE
Sbjct: 61  QVLAIDFIESVIRENEVINGRFKNTKFVCADVTSPDLDISPGSVDLIFSNWLLMYLSDKE 120

Query: 121 VKIL 124
           V+ L
Sbjct: 121 VEDL 124


>GSVIVT01011713001 assembled CDS
          Length = 484

 Score =  131 bits (329), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 76/124 (61%), Positives = 92/124 (74%)

Query: 1   MEHSVDLTVEAMMLDSKASDLDKEERPEVLSMLPSYEGKSVLEFGAGIGRFTGEIAQNAG 60
           ME S  +TVEA MLDSKAS L KEE  E+LS+LP  EGK V+E G GIG FT E+A+ A 
Sbjct: 1   MEQSGQVTVEARMLDSKASHLQKEEMAELLSLLPPLEGKHVVEIGKGIGHFTDELAKQAA 60

Query: 61  QLVALDFIDSVIKKNESINGHYKNVKFICADVTSQDLKFSEGSVDLIFSNWLLMYLSDKE 120
           Q++ +DF +S I KNE +NGH+ NV F+CADVTS +L  S GSVDLIF N LL +LSDKE
Sbjct: 61  QVLVIDFTESKIPKNEFLNGHFNNVTFMCADVTSPNLDISPGSVDLIFLNCLLTHLSDKE 120

Query: 121 VKIL 124
           V+ L
Sbjct: 121 VENL 124