Jatropha Genome Database

JcCB0027171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0027171.10 + phase: 0 /partial
         (172 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024030001 assembled CDS                                       166   6e-42

>GSVIVT01024030001 assembled CDS
          Length = 339

 Score =  166 bits (419), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 77/98 (78%), Positives = 88/98 (89%)

Query: 6   RRQGIYCRYHKSKASEVYSTTRTELRGGNLKTAFRDTLKSQGIYLVDPLSDKTNINKPVQ 65
           +R+G+YCRYHKSKASE YS  RTEL+GGNLKTAFRD L S+G+YLVDPL+DKTN+ +P+Q
Sbjct: 229 KRRGVYCRYHKSKASEKYSIMRTELKGGNLKTAFRDPLNSKGVYLVDPLADKTNVKRPMQ 288

Query: 66  PLKLLSVEGLKKALSNADKVTTNTFSQGIRFLNEITGL 103
           PLKLLSV+GLKKALSNA KVTTN  SQGIRFL EITGL
Sbjct: 289 PLKLLSVDGLKKALSNAGKVTTNAHSQGIRFLTEITGL 326