Jatropha Genome Database

JcCB0026071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0026071.10 - phase: 0 
         (171 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029221001 assembled CDS                                       284   2e-77
GSVIVT01008288001 assembled CDS                                       177   2e-45

>GSVIVT01029221001 assembled CDS
          Length = 169

 Score =  284 bits (726), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 130/166 (78%), Positives = 148/166 (89%), Gaps = 1/166 (0%)

Query: 4   SAGILTSAVAGSGYQGLKANSAKQLFPAKDSISWNSKTVSNGSRIHCMKTWNPINNKKFE 63
           +AGIL+  V   GY GLK +  K LFPAKDS++W+ KTVSNGS+ HCMKTWNPINNKKFE
Sbjct: 2   AAGILSGPVTSFGYVGLKPHQPK-LFPAKDSVAWSRKTVSNGSKTHCMKTWNPINNKKFE 60

Query: 64  TLSYLPPLSDDSIAKNIDYMIKMGWIPCLEFDEVGHVRRENSRMPGYYDGRYWTLWKLPM 123
           TLSYLPPLSDDSIAK IDYM+K GWIPCLEFDEVG+V R+NS++PGYYDGRYWTLWKLPM
Sbjct: 61  TLSYLPPLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVFRKNSQIPGYYDGRYWTLWKLPM 120

Query: 124 FGCNDSAQVLNEMHECKKAYPNAYIRCLAFDNKKQCQCMSFIIQKP 169
           FGCND++QVLNE+HECKK YPNAYIRCLAFDN+ Q QCM+F+IQKP
Sbjct: 121 FGCNDASQVLNEIHECKKTYPNAYIRCLAFDNEHQGQCMAFVIQKP 166


>GSVIVT01008288001 assembled CDS
          Length = 157

 Score =  177 bits (450), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 82/155 (52%), Positives = 110/155 (70%), Gaps = 5/155 (3%)

Query: 17  YQGLKANSAKQLFPAKDSISWNSKTV-SNGSRIHCMKTWNPINNKKFETLSYLPPLSDDS 75
           + GLK+ S    FP     + +  +V SNG R+ CMK W      KFETLSYLPPL+D+ 
Sbjct: 5   FTGLKSLST---FPGTRKANTDITSVASNGGRVRCMKVWPTEGLMKFETLSYLPPLNDEQ 61

Query: 76  IAKNIDYMIKMGWIPCLEFDEV-GHVRRENSRMPGYYDGRYWTLWKLPMFGCNDSAQVLN 134
           + K +DY+++M WIPCLEF ++  +  RE++R PGYYDGRYWT+WKLPMFGC DSAQV+ 
Sbjct: 62  LCKEVDYLLRMKWIPCLEFTKLYPYPHREHNRSPGYYDGRYWTMWKLPMFGCTDSAQVIK 121

Query: 135 EMHECKKAYPNAYIRCLAFDNKKQCQCMSFIIQKP 169
           E+ E + AYP+A+IR + FDN +Q QC++FI  KP
Sbjct: 122 EVQEARTAYPDAHIRIIGFDNNRQVQCIAFIAYKP 156