Jatropha Genome Database

JcCB0026001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0026001.10 + phase: 0 
         (372 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009978001 assembled CDS                                       628   e-180
GSVIVT01026470001 assembled CDS                                       588   e-168
GSVIVT01027439001 assembled CDS                                       133   1e-31
GSVIVT01020139001 assembled CDS                                       103   2e-22
GSVIVT01016131001 assembled CDS                                        80   2e-15

>GSVIVT01009978001 assembled CDS
          Length = 471

 Score =  628 bits (1620), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 296/380 (77%), Positives = 334/380 (87%), Gaps = 8/380 (2%)

Query: 1   MRFISQSNEKRVPCYRLLDDDGELTENNDFDE--------MYREMVTLQMMDTIFYEAQR 52
           M+FI    ++RV CY L+++DG+    + F++        MY +M+TLQ+MDTIFYEAQR
Sbjct: 92  MQFIPGYPQQRVHCYHLMNNDGQTNMCSSFEQVSKEVAVKMYSDMITLQIMDTIFYEAQR 151

Query: 53  QGRISFYVTSNGEEAINIASAAALGPDDVVLPQYREPGVLLWRGFTLEEFTNQCFGNKAD 112
           QGRISFY+TS GEEAINIASAAAL PDD+V+ QYREPGVLLWRGFTL+EF NQCFGNKAD
Sbjct: 152 QGRISFYLTSVGEEAINIASAAALSPDDIVMAQYREPGVLLWRGFTLQEFANQCFGNKAD 211

Query: 113 YGKGRQMPIHYGSKKHNYFTVSSPIATQLPQAVGVAYSLKMDKKDACAVAYIGDGGTSEG 172
            GKGRQMPIHYGSKK NYFTVSSP+ATQLPQAVG AYSLKMD KDAC VAY GDG TSEG
Sbjct: 212 CGKGRQMPIHYGSKKLNYFTVSSPLATQLPQAVGAAYSLKMDNKDACVVAYFGDGSTSEG 271

Query: 173 DFHAALNFAAVMEAPVIFICRNNGWAISTHISEQFRSDGIVVKGQAYGIQSIRVDGNDAL 232
           DFHA+LNFAAVMEAPVIF+CRNNGWAIST  SEQFRSDGIVVKG AYGIQSIRVDGNDAL
Sbjct: 272 DFHASLNFAAVMEAPVIFLCRNNGWAISTPTSEQFRSDGIVVKGPAYGIQSIRVDGNDAL 331

Query: 233 AVYKTICAAREIAINEQRPILVEALTYRVGHHSTSDDSTKYRPVNEIEYWKMERNPVNRF 292
           AV+  + AAR++AI+EQRPILVEALTYRVGHHSTSDDSTKYRPV+E+++W+M +NPVNRF
Sbjct: 332 AVHNAVRAARQMAIHEQRPILVEALTYRVGHHSTSDDSTKYRPVDEVKHWEMGQNPVNRF 391

Query: 293 RKWVERNGWWSDADESEVRSSIRKQLLKAIQVAEKTEKPPLGDLFDDVYDLPPSDLREQE 352
           RKWVERNGWWS+ DES++RSSIRKQLL+AIQVAEK EKPPL DLF DVYD+PPS L EQE
Sbjct: 392 RKWVERNGWWSEEDESQLRSSIRKQLLQAIQVAEKMEKPPLADLFSDVYDVPPSILFEQE 451

Query: 353 KQLRETINRHPHDYPSDVPL 372
           +QLRETI RHP DYPSDVP+
Sbjct: 452 QQLRETIKRHPQDYPSDVPV 471


>GSVIVT01026470001 assembled CDS
          Length = 481

 Score =  588 bits (1516), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 273/378 (72%), Positives = 318/378 (84%), Gaps = 7/378 (1%)

Query: 1   MRFISQSNEKRVPCYRLLDDDGELTENNDFD-------EMYREMVTLQMMDTIFYEAQRQ 53
           MRFI +S  +R  CYR+LDD+G+   +N          +MY  M+TLQ+MDTIFYEAQRQ
Sbjct: 102 MRFIPESPMERAHCYRVLDDNGQPNMSNFVQVSKEVAVKMYATMLTLQVMDTIFYEAQRQ 161

Query: 54  GRISFYVTSNGEEAINIASAAALGPDDVVLPQYREPGVLLWRGFTLEEFTNQCFGNKADY 113
           GRISFYVTS GEEAIN+ASAAAL  DDV+ PQYREPGVLLWRGFTL+EF NQCFGNKADY
Sbjct: 162 GRISFYVTSIGEEAINVASAAALSIDDVIFPQYREPGVLLWRGFTLQEFANQCFGNKADY 221

Query: 114 GKGRQMPIHYGSKKHNYFTVSSPIATQLPQAVGVAYSLKMDKKDACAVAYIGDGGTSEGD 173
           GKGRQMPIHYGS KHNY TVSS +ATQ+PQAVG AYSLKMD KDAC V Y GDGG+S GD
Sbjct: 222 GKGRQMPIHYGSNKHNYVTVSSTVATQIPQAVGAAYSLKMDGKDACTVTYFGDGGSSTGD 281

Query: 174 FHAALNFAAVMEAPVIFICRNNGWAISTHISEQFRSDGIVVKGQAYGIQSIRVDGNDALA 233
           FHAALNFAAVMEAPVIFICRNNGWAIST +S+QFRSDG+VV+G+ YG++SIRVDGNDALA
Sbjct: 282 FHAALNFAAVMEAPVIFICRNNGWAISTPVSDQFRSDGVVVRGRGYGVRSIRVDGNDALA 341

Query: 234 VYKTICAAREIAINEQRPILVEALTYRVGHHSTSDDSTKYRPVNEIEYWKMERNPVNRFR 293
           +Y  + AAR++AI E RPIL+EALTYR GHHSTSDDS+KYRPV+EIE W+M R+PV+R R
Sbjct: 342 MYTAVHAARKMAITEHRPILIEALTYRAGHHSTSDDSSKYRPVSEIELWRMARDPVSRLR 401

Query: 294 KWVERNGWWSDADESEVRSSIRKQLLKAIQVAEKTEKPPLGDLFDDVYDLPPSDLREQEK 353
           +W+E N WWS   ESE+RS++RK++L AIQVAE+ EKPP+ ++F DVYD PPS+L EQEK
Sbjct: 402 RWIESNDWWSGEAESELRSNVRKEVLDAIQVAERVEKPPIAEIFTDVYDAPPSNLCEQEK 461

Query: 354 QLRETINRHPHDYPSDVP 371
            LRETI R+P DYP DVP
Sbjct: 462 LLRETIRRYPQDYPPDVP 479


>GSVIVT01027439001 assembled CDS
          Length = 433

 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 149/323 (46%), Gaps = 15/323 (4%)

Query: 32  EMYREMVTLQ----MMDTIFYEAQRQGRISFYVTSNGEEAINIASAAALGPDDVVLPQYR 87
           E+Y +MV  +    M   ++Y  +  G +  Y   NG+EA++      L  +D V+  YR
Sbjct: 91  ELYEDMVLGRAFEDMCAQMYYRGKMFGFVHLY---NGQEAVSTGFIKLLKKEDCVVSTYR 147

Query: 88  EPGVLLWRGFTLEEFTNQCFGNKADYGKGRQMPIHYGSKKHNYFTVSSPIATQLPQAVGV 147
           +    L +G       ++ FG      +G+   +H  SK+HN     + I   +P A G 
Sbjct: 148 DHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNVLGGFAFIGEGIPVATGA 207

Query: 148 AYSLKMDKK------DACAVAYIGDGGTSEGDFHAALNFAAVMEAPVIFICRNNGWAIST 201
           A++ K  ++      D   +A+ GDG  + G F   LN A++ + P++F+  NN WAI  
Sbjct: 208 AFTSKYKREVLKEDCDEVTLAFFGDGTCNNGQFFECLNMASLWKLPIVFVVENNLWAIGM 267

Query: 202 HISEQFRSDGIVVKGQAYGIQSIRVDGNDALAVYKTICAAREIAINEQRPILVEALTYRV 261
                     I  KG A+G+    VDG D L V +    A + A   + P LVE  TYR 
Sbjct: 268 SHLRATSDPEIWKKGPAFGMPGFHVDGMDVLKVREVAKEAIQRARRGEGPTLVECETYRF 327

Query: 262 GHHSTSDDSTKYRPVNEIEYWKMERNPVNRFRKWVERNGWWSDADESEVRSSIRKQLLKA 321
             HS +D      P  +  Y    R+P+   +K++  N   S+A+   +   I + + ++
Sbjct: 328 RGHSLADPDELRDPAEKAHY--AARDPLTALKKYIFDNKLASEAELKAIEKKIDEVVEES 385

Query: 322 IQVAEKTEKPPLGDLFDDVYDLP 344
           ++ A+ +  PP   L ++V+  P
Sbjct: 386 VEFADASPPPPRSQLLENVFADP 408


>GSVIVT01020139001 assembled CDS
          Length = 197

 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 96/177 (54%), Gaps = 3/177 (1%)

Query: 165 GDGGTSEGDFHAALNFAAVMEAPVIFICRNNGWAISTHISEQFRSDGIVVKGQAYGIQSI 224
           GDG  ++G    ALN AA+++ P I +C NN + + T      +S     +G    +  +
Sbjct: 3   GDGAANQGQLFEALNIAALLDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDY--VPGL 60

Query: 225 RVDGNDALAVYKTICAAREIAINEQRPILVEALTYRVGHHSTSDDSTKYRPVNEIEYWKM 284
           +VDG DALAV +    A+E A+ +  PI++E  TYR   HS SD  + YR  +EI   + 
Sbjct: 61  KVDGMDALAVKQACRFAKEHAL-KNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQ 119

Query: 285 ERNPVNRFRKWVERNGWWSDADESEVRSSIRKQLLKAIQVAEKTEKPPLGDLFDDVY 341
           ER+P+ R RK +  +   ++A+   +   IR ++  AI  A+++  P   +LF +VY
Sbjct: 120 ERDPIERIRKLILSHELSTEAELKSIEKKIRSEVDDAIAQAKESSMPEPSELFTNVY 176


>GSVIVT01016131001 assembled CDS
          Length = 180

 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 3/162 (1%)

Query: 180 FAAVMEAPVIFICRNNGWAISTHISEQFRSDGIVVKGQAYGIQSIRVDGNDALAVYKTIC 239
            AA+ + P I +C NN + + T      +S     +G    +  ++VDG D LAV +   
Sbjct: 1   MAALWDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDY--VPGLKVDGMDVLAVKQACR 58

Query: 240 AAREIAINEQRPILVEALTYRVGHHSTSDDSTKYRPVNEIEYWKMERNPVNRFRKWVERN 299
            A+E A+    PI++E  TYR   HS SD  + YR  +EI   + ER+ + R RK +  +
Sbjct: 59  FAKEHALKNG-PIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDAIERVRKLILSH 117

Query: 300 GWWSDADESEVRSSIRKQLLKAIQVAEKTEKPPLGDLFDDVY 341
              ++A+   +   IR Q+  AI  A+++  P   +LF +VY
Sbjct: 118 ELSTEAELKSIEKEIRGQVDDAIARAKESPMPDPSELFTNVY 159