Jatropha Genome Database

JcCB0025751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0025751.10 - phase: 0 /partial
         (191 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026455001 assembled CDS                                       357   1e-99

>GSVIVT01026455001 assembled CDS
          Length = 1089

 Score =  357 bits (917), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 169/191 (88%), Positives = 173/191 (90%)

Query: 1    RDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPLLRI 60
            RDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPLLRI
Sbjct: 899  RDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPLLRI 958

Query: 61   FEPILKNASKELLHGXXXXXXXXXXXXXXXXMKFAKKQLSCIGCKALISNSDRTLCSHCK 120
            FEPILKNASKELLHG                MKFAKKQLSCIGCKALISN+DRTLCSHCK
Sbjct: 959  FEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQLSCIGCKALISNTDRTLCSHCK 1018

Query: 121  GREAELYCKTVSQVSELELLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMA 180
            GREAELYCKTV+ VSELE+LFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMA
Sbjct: 1019 GREAELYCKTVANVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMA 1078

Query: 181  EAKRQLDRWNF 191
            EAK QL+RWNF
Sbjct: 1079 EAKLQLERWNF 1089