Jatropha Genome Database

JcCB0025551.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0025551.20 + phase: 2 /partial
         (206 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015090001 assembled CDS                                       409   e-115
GSVIVT01026291001 assembled CDS                                       357   2e-99

>GSVIVT01015090001 assembled CDS
          Length = 215

 Score =  409 bits (1051), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 193/206 (93%), Positives = 199/206 (96%)

Query: 1   NQKTFRPKKNAPSGSKGAQLQKHIDATLGSGNLREAVRLPPGEDINEWLAVNTVDFFNQV 60
           NQKTFRPKK+APSGSKGAQLQKHIDATLGSGNLREAVRLPPGED NEWLAVNTVDFFNQV
Sbjct: 10  NQKTFRPKKSAPSGSKGAQLQKHIDATLGSGNLREAVRLPPGEDPNEWLAVNTVDFFNQV 69

Query: 61  NILYGTLTEFCTATSCPTMTAGPKYEYRWADGITIKKPIEVSAPKYVEYLMDWIEAQLDD 120
           NILYGTLTEFCTA+ CPTM+AGPKYEYRWADG+TIKKPIEVSAPKYVEYLMDWIE QLDD
Sbjct: 70  NILYGTLTEFCTASICPTMSAGPKYEYRWADGVTIKKPIEVSAPKYVEYLMDWIETQLDD 129

Query: 121 EMIFPQKLGAPFPTNFRDVVKTIFKRLFRVYAHIYHEHFQKIVSLKEEAHLNTCFKHFVL 180
           E IFPQKLGAPFP NF+DVVKTIFKRLFRVYAHIYH HFQKIVSLKEEAHLNTCFKHFVL
Sbjct: 130 ESIFPQKLGAPFPNNFQDVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFVL 189

Query: 181 FTWEFRLIDKGELAPLQDLVESILQL 206
           FTWEFRLIDKGELAPL DL+ESILQL
Sbjct: 190 FTWEFRLIDKGELAPLYDLIESILQL 215


>GSVIVT01026291001 assembled CDS
          Length = 215

 Score =  357 bits (916), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 168/188 (89%), Positives = 178/188 (94%)

Query: 17  GAQLQKHIDATLGSGNLREAVRLPPGEDINEWLAVNTVDFFNQVNILYGTLTEFCTATSC 76
           GAQL+KHIDATLGSGNLREAVRLPPGED NEWLAVNTVDFFNQVN+LYGTLTEFCT  +C
Sbjct: 25  GAQLRKHIDATLGSGNLREAVRLPPGEDANEWLAVNTVDFFNQVNLLYGTLTEFCTPENC 84

Query: 77  PTMTAGPKYEYRWADGITIKKPIEVSAPKYVEYLMDWIEAQLDDEMIFPQKLGAPFPTNF 136
           PTMTAGPKYEYRWADG+ IKKPIEVSAPKYVEYLMDWIEAQLDDE IFPQKLGAPFP NF
Sbjct: 85  PTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIEAQLDDESIFPQKLGAPFPPNF 144

Query: 137 RDVVKTIFKRLFRVYAHIYHEHFQKIVSLKEEAHLNTCFKHFVLFTWEFRLIDKGELAPL 196
           R+VVKTIFKRLFRVYAHIYH HFQKIVSLKEEAHLNTCFKHF+LFT EF LID+ ELAPL
Sbjct: 145 REVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTCEFVLIDRKELAPL 204

Query: 197 QDLVESIL 204
           Q+L+ESI+
Sbjct: 205 QELIESII 212