Jatropha Genome Database

JcCB0025091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0025091.10 - phase: 0 
         (148 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019417001 assembled CDS                                       219   3e-58

>GSVIVT01019417001 assembled CDS
          Length = 370

 Score =  219 bits (559), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 105/143 (73%), Positives = 114/143 (79%)

Query: 1   MAAPEAPVCYVGVARASPAFRLMKQMGWEEGEGLGKDKQGIKGYVRVKNKQDTTGVGVEK 60
           MAAPEAP+CYVG+AR S AFRLMKQMGWEEGEGLGKDKQGIKGYVRV+NKQDT GVGVEK
Sbjct: 1   MAAPEAPLCYVGIARQSAAFRLMKQMGWEEGEGLGKDKQGIKGYVRVQNKQDTLGVGVEK 60

Query: 61  PSNWAFDTTQFDSILKRLKVQAAHXXXXXXXXXXXXXXXXXXXSTGLQEPVVKATRPQGR 120
           P+NWAFDT QFDSILK+LKVQA                     S  +++PVVK TRPQGR
Sbjct: 61  PNNWAFDTAQFDSILKKLKVQAVETNDEVDEKNDVQAGKESDASKDVKDPVVKVTRPQGR 120

Query: 121 YKRRERGKLVQSYSSKDLEGILV 143
           YKRRE+GKLV SYSSKDLEGILV
Sbjct: 121 YKRREKGKLVHSYSSKDLEGILV 143