Jatropha Genome Database

JcCB0023791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0023791.10 + phase: 0 /partial
         (112 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012252001 assembled CDS                                       101   8e-23
GSVIVT01036545001 assembled CDS                                       100   1e-22
GSVIVT01001107001 assembled CDS                                        96   3e-21
GSVIVT01019385001 assembled CDS                                        89   3e-19
GSVIVT01027002001 assembled CDS                                        79   5e-16
GSVIVT01017909001 assembled CDS                                        65   5e-12
GSVIVT01037523001 assembled CDS                                        62   8e-11
GSVIVT01022547001 assembled CDS                                        61   1e-10
GSVIVT01018761001 assembled CDS                                        50   3e-07
GSVIVT01018684001 assembled CDS                                        48   8e-07
GSVIVT01022104001 assembled CDS                                        46   3e-06
GSVIVT01012873001 assembled CDS                                        46   3e-06
GSVIVT01005189001 assembled CDS                                        45   5e-06
GSVIVT01022107001 assembled CDS                                        45   5e-06
GSVIVT01022106001 assembled CDS                                        45   5e-06
GSVIVT01008756001 assembled CDS                                        45   7e-06
GSVIVT01022103001 assembled CDS                                        45   8e-06

>GSVIVT01012252001 assembled CDS
          Length = 141

 Score =  101 bits (251), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 54/67 (80%)

Query: 27  SKLEAEITYLYASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
           +++   I  +  S +DEDVCPTCLEDY+ +NP+IVT C HHFHLGCIYEW+ERSQ+CP+C
Sbjct: 58  AEVAGRIECISTSSEDEDVCPTCLEDYTPENPKIVTQCSHHFHLGCIYEWLERSQTCPVC 117

Query: 87  FKVINFF 93
            KV +F+
Sbjct: 118 SKVTSFY 124


>GSVIVT01036545001 assembled CDS
          Length = 225

 Score =  100 bits (250), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 55/66 (83%)

Query: 27  SKLEAEITYLYASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
           +K    + ++Y+S +DEDVCPTCLE+Y+ +NP+I+T C HHFHLGCIYEWMERS++CP+C
Sbjct: 156 AKTTMGLGFIYSSSEDEDVCPTCLEEYTPENPKIMTKCSHHFHLGCIYEWMERSETCPVC 215

Query: 87  FKVINF 92
            KV+ F
Sbjct: 216 GKVMMF 221


>GSVIVT01001107001 assembled CDS
          Length = 232

 Score = 96.3 bits (238), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 51/66 (77%)

Query: 27  SKLEAEITYLYASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
           +K    + Y+  + +DEDVCPTCL++Y+ +NP+I T C HHFHLGCIYEWMERS+SCP+C
Sbjct: 163 TKAAHGLAYIQTTSEDEDVCPTCLDEYTPENPKITTQCSHHFHLGCIYEWMERSESCPIC 222

Query: 87  FKVINF 92
            K + F
Sbjct: 223 GKEMEF 228


>GSVIVT01019385001 assembled CDS
          Length = 227

 Score = 89.4 bits (220), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 46/57 (80%)

Query: 36  LYASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKVINF 92
           + +S D+EDVCPTCLE+Y  +NP+IVT C+HHFHL CI EWMERS +CP+C K + F
Sbjct: 165 IVSSTDEEDVCPTCLEEYDAENPKIVTKCEHHFHLACILEWMERSDTCPVCDKEMIF 221


>GSVIVT01027002001 assembled CDS
          Length = 184

 Score = 79.0 bits (193), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 1   QITNGFDIVRSSDYNNSSKSPHPIRESKLEAEITYL--YASQDDEDVCPTCLEDYSFDNP 58
           +  NG   +R SD    + S  P    K E  I+    +   +++D CP CLE+Y  +NP
Sbjct: 86  ETINGSKGLRVSDCKTQASS-LPTSPRKFELPISNEPNFLPLEEDDACPICLEEYDLENP 144

Query: 59  RIVTHCQHHFHLGCIYEWMERSQSCPLC 86
           + +T C HHFHL CI EWMERS++CP+C
Sbjct: 145 KTITKCNHHFHLSCILEWMERSETCPVC 172


>GSVIVT01017909001 assembled CDS
          Length = 391

 Score = 65.5 bits (158), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 39/60 (65%)

Query: 31 AEITYLYASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKVI 90
          +E +   A    ED C  CLE +S D+P  +T+C+H +HL CI EW +RS+ CP+C++ +
Sbjct: 14 SEFSAGAADDASEDSCSICLEPFSTDDPATITNCRHEYHLQCILEWSQRSKECPICWQFL 73


>GSVIVT01037523001 assembled CDS
          Length = 393

 Score = 61.6 bits (148), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 32/50 (64%)

Query: 43 EDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKVINF 92
          +D C  CLE +   +P  VT C+H FHL CI EW +RS  CP+C++ I+ 
Sbjct: 32 DDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISL 81


>GSVIVT01022547001 assembled CDS
          Length = 391

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 32/50 (64%)

Query: 43 EDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKVINF 92
          +D C  CLE +   +P  +T C+H FHL CI EW +RS  CP+C++ I+ 
Sbjct: 32 DDACSICLEAFCDSDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQSISL 81


>GSVIVT01018761001 assembled CDS
          Length = 352

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 8/88 (9%)

Query: 6   FDIVRSSDYNNSSKSPH-PIRESKLEAEITYLYASQDDE----DVCPTCLEDYSFDNPRI 60
           F + R+   N    +PH P  ++KL   +     SQ  E    D C  CLEDY  D  R+
Sbjct: 244 FFLTRNRRLNQRGTNPHRPSVDAKLVEVLPCFTFSQACECRVGDTCSICLEDYK-DGERL 302

Query: 61  -VTHCQHHFHLGCIYEWMERSQS-CPLC 86
            V  CQH FH  C+  W+ +  + CP+C
Sbjct: 303 RVLPCQHEFHASCVDSWLTKWGTFCPVC 330


>GSVIVT01018684001 assembled CDS
          Length = 121

 Score = 48.1 bits (113), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 27  SKLEAEITYLYASQDDED-VCPTCLEDY-SFDNPRIVTHCQHHFHLGCIYEWMERSQSCP 84
           SK   + TY  + Q+ E+ +C  CLE+Y S +    + +C H +H+GCI +W+    SCP
Sbjct: 48  SKCLTKTTYHSSDQNQEEAMCTICLEEYKSKEEVGRMKNCGHEYHVGCIRKWLSMKNSCP 107

Query: 85  LC 86
           +C
Sbjct: 108 IC 109


>GSVIVT01022104001 assembled CDS
          Length = 137

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 42  DEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
           D + C  CLE+Y+ D+      C H +H+ CI EW+ +  SCP+C
Sbjct: 86  DAETCCICLEEYADDDDVGKLDCGHEYHVACIKEWLVQKNSCPIC 130


>GSVIVT01012873001 assembled CDS
          Length = 119

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 14  YNNSSKSPHPIRESKLEAEITYLYASQD-DEDVCPTCLEDYSFDNPRIVTHCQHHFHLGC 72
           Y N+  S   + ES L+    +L+  ++  ++ C  C EDY  D+   V  C H FH  C
Sbjct: 29  YANTGLSEEEVLES-LKHTKYFLFGEENASKECCSICQEDYVEDDELGVLDCDHSFHSAC 87

Query: 73  IYEWMERSQSCPLCFKV-INFFNLYLP 98
           I +W+     CP+C    ++   L LP
Sbjct: 88  IQQWLRSKNLCPICKSTGLSTTGLVLP 114


>GSVIVT01005189001 assembled CDS
          Length = 235

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 46  CPTCLEDYSF-DNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
           C  CL+D+   +  R + HC H FHL CI +W+    SCPLC
Sbjct: 190 CSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLLGHGSCPLC 231


>GSVIVT01022107001 assembled CDS
          Length = 102

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 38 ASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
           S  D ++C  C E+Y+ D+      C H +H+ CI EW+ +  SCP+C
Sbjct: 47 GSSVDAEICCICQEEYADDDGVGNLDCGHVYHVACIKEWLAQKNSCPIC 95


>GSVIVT01022106001 assembled CDS
          Length = 244

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 42  DEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKV 89
           D + C  C E+Y+ D       C H +H+ CI EW+ +  SCP+C K 
Sbjct: 193 DAETCCICQEEYADDEDVGKLDCGHEYHVVCIKEWLSKKNSCPICKKT 240


>GSVIVT01008756001 assembled CDS
          Length = 162

 Score = 45.1 bits (105), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 46  CPTCLEDYSFDNP-RIVTHCQHHFHLGCIYEWMERSQSCPLCFKVI--NFFN 94
           C  CL++   D P R++  C H FHL C   W+ +   CPLC  ++   FFN
Sbjct: 105 CAVCLDEIESDAPARLIPGCNHGFHLQCADTWLSKHSVCPLCRAILAPEFFN 156


>GSVIVT01022103001 assembled CDS
          Length = 145

 Score = 45.1 bits (105), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 43  EDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKV 89
           E  C  C E+Y+ D+      C+H +H+ CI EW+ +  SCP+C K 
Sbjct: 95  EKTCCICQEEYADDDDIGKLDCEHEYHVACIREWLVQKNSCPICKKT 141