Jatropha Genome Database

JcCB0023641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0023641.10 - phase: 1 /partial
         (454 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016291001 assembled CDS                                       719   0.0  
GSVIVT01016290001 assembled CDS                                       667   0.0  
GSVIVT01024770001 assembled CDS                                       166   2e-41
GSVIVT01032851001 assembled CDS                                       138   6e-33
GSVIVT01008052001 assembled CDS                                        64   2e-10

>GSVIVT01016291001 assembled CDS
          Length = 853

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/454 (75%), Positives = 384/454 (84%), Gaps = 5/454 (1%)

Query: 1   RRARFSFMGGKGGSLWKQMTFRLSDQSDTTFKSGGYLSIEDARGSTNSIYLENGFLDFLN 60
           +RARFSFMGGKGGSLWKQ+TF+LS +     + GG L IED +G   SI+LE+GFLDFLN
Sbjct: 396 KRARFSFMGGKGGSLWKQVTFKLSHE-----RRGGNLLIEDGQGRIRSIFLEDGFLDFLN 450

Query: 61  QELLSFRYDEKDFEGLPFDFXXXXXXXXXXXLKVECGMLSNRFRSKTPDACFFFADNFVV 120
           +ELLS RY+EKD+EGLPF+F           LKVECGM SN  +S TPDACFFFADN +V
Sbjct: 451 KELLSLRYEEKDYEGLPFNFHGGYVGYIGYNLKVECGMASNHHKSSTPDACFFFADNVIV 510

Query: 121 IDHRYDDVYIMSIQEESGTNSSWLDDVEQKLLHLEASATRKLEQQTSQPTTSFPCKAGFH 180
           IDH YDDVYIMS+ E     + WLDD EQKLL L+ASA +K + ++ QP T  P KAGF 
Sbjct: 511 IDHHYDDVYIMSLHEGQTATTQWLDDTEQKLLGLKASAAKKFKVESPQPVTHSPSKAGFF 570

Query: 181 AMKSREQYMEDVNKCLKYIRDGESYELCLTTQIRKRVQDIDSLGLYLHLREKNPAPYAAW 240
           A KSREQYM+DV KCLK I+DGESYELCLTTQ+RKR+  ID LGLYL+LREKNPAPYAAW
Sbjct: 571 AEKSREQYMKDVEKCLKLIKDGESYELCLTTQMRKRIGQIDYLGLYLNLREKNPAPYAAW 630

Query: 241 LNFSNENLCICCSSPERFLRLDRNGILEAKPIKGTIARGATEEEDEQLRWQLQYSEKDQA 300
           LNFS ENLCICCSSPERFL+LD NGILEAKPIKGTIARG T+EEDE L+ QLQYSEKDQA
Sbjct: 631 LNFSKENLCICCSSPERFLQLDGNGILEAKPIKGTIARGLTKEEDEHLKLQLQYSEKDQA 690

Query: 301 ENLMIVDLLRNDLGRVCEPGSVHVPHLMDVESYATVHTMVSTIRGKKKSNINAVDCVRAA 360
           ENLMIVDLLRNDLGRVCEPGS+HVP LMDVESYATVHTMVSTIRGKK+S ++ VDCVRAA
Sbjct: 691 ENLMIVDLLRNDLGRVCEPGSIHVPCLMDVESYATVHTMVSTIRGKKQSKMSPVDCVRAA 750

Query: 361 FPGGSMTGAPKLRSMELLDSLESCSRGIYSGSIGFFSYNQTFDLNIVIRTIVIHDGEASI 420
           FPGGSMTGAPKLRSMELLDS+E+ SRGIYSGSIGFFSYNQTFDLNIVIRTIVIH+GEAS+
Sbjct: 751 FPGGSMTGAPKLRSMELLDSIETSSRGIYSGSIGFFSYNQTFDLNIVIRTIVIHEGEASV 810

Query: 421 GAGGAIVALSNPEDEYNEMLLKTRAPAKAVVEFQ 454
           G GGAIVALSNPE EY EM+LKTRAP   V+EFQ
Sbjct: 811 GGGGAIVALSNPESEYEEMILKTRAPVNTVLEFQ 844


>GSVIVT01016290001 assembled CDS
          Length = 827

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/452 (70%), Positives = 370/452 (81%)

Query: 3   ARFSFMGGKGGSLWKQMTFRLSDQSDTTFKSGGYLSIEDARGSTNSIYLENGFLDFLNQE 62
            RFSFMG KGGSLWKQ TFRLS +SDT  + GG+LSIED++GS  + +LE GFL+FLN+E
Sbjct: 358 GRFSFMGAKGGSLWKQFTFRLSHKSDTASEGGGHLSIEDSQGSITNTFLEGGFLEFLNKE 417

Query: 63  LLSFRYDEKDFEGLPFDFXXXXXXXXXXXLKVECGMLSNRFRSKTPDACFFFADNFVVID 122
           LLS RYD++D+EGLPF F           LKVECG   NR +SKTPDACFFFADN VVID
Sbjct: 418 LLSIRYDKRDYEGLPFAFHGGYVGYLGYDLKVECGAAFNRHKSKTPDACFFFADNIVVID 477

Query: 123 HRYDDVYIMSIQEESGTNSSWLDDVEQKLLHLEASATRKLEQQTSQPTTSFPCKAGFHAM 182
           H YDDVYI+S+ E S    +WLD+ E++LL L+AS T K E   S   T  P +AGF A 
Sbjct: 478 HHYDDVYILSLHEGSTATPAWLDETEKRLLGLKASDTNKSEVSMSLTATLSPSEAGFLAD 537

Query: 183 KSREQYMEDVNKCLKYIRDGESYELCLTTQIRKRVQDIDSLGLYLHLREKNPAPYAAWLN 242
           KS EQYM+DV +CL++I+DGESYELCLT+Q+RKR+ ++D L  YLHLREKNPAP+AAWLN
Sbjct: 538 KSMEQYMKDVKQCLQFIKDGESYELCLTSQLRKRIGEMDLLDFYLHLREKNPAPFAAWLN 597

Query: 243 FSNENLCICCSSPERFLRLDRNGILEAKPIKGTIARGATEEEDEQLRWQLQYSEKDQAEN 302
           F  E LCIC SSPERFL+LD NG+LEAKPIKGT+ RG+ +E DEQL+ +LQ SEKDQAEN
Sbjct: 598 FPKEKLCICSSSPERFLKLDENGMLEAKPIKGTVPRGSAKEADEQLKQKLQCSEKDQAEN 657

Query: 303 LMIVDLLRNDLGRVCEPGSVHVPHLMDVESYATVHTMVSTIRGKKKSNINAVDCVRAAFP 362
           LMIVDLLRN+LGRVCE GSVHVP LMDVESY TVHTMVSTIRGKK S ++ VDCVRAAFP
Sbjct: 658 LMIVDLLRNNLGRVCEVGSVHVPLLMDVESYTTVHTMVSTIRGKKDSTMSPVDCVRAAFP 717

Query: 363 GGSMTGAPKLRSMELLDSLESCSRGIYSGSIGFFSYNQTFDLNIVIRTIVIHDGEASIGA 422
           GGSMTGAPKLRSMELLDS+ES SRGIYSGSIGFFSYNQTFDLNIVIRT+VIH+GEAS+GA
Sbjct: 718 GGSMTGAPKLRSMELLDSIESSSRGIYSGSIGFFSYNQTFDLNIVIRTVVIHEGEASVGA 777

Query: 423 GGAIVALSNPEDEYNEMLLKTRAPAKAVVEFQ 454
           GGAI+ALS+P  E+ EM+LKTRAP  AV  +Q
Sbjct: 778 GGAIIALSDPAGEHEEMILKTRAPVNAVASYQ 809


>GSVIVT01024770001 assembled CDS
          Length = 589

 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 193/354 (54%), Gaps = 21/354 (5%)

Query: 108 PDACFFFADNFVVIDHRYDDVYIMS---IQEESGTNSSWLDDVEQKLLHLEASATR---- 160
           PD      ++ +V DH    V+++    + + S    ++ D + +    LEA  +R    
Sbjct: 236 PDVHLGLYEDVLVFDHVKKQVFVIHWVRLDQYSSVEEAFNDGMNR----LEALVSRVHDI 291

Query: 161 ---KLEQQTSQPTTSFPCKAGFHAMKSREQYMEDVNKCLKYIRDGESYELCLTTQIRKRV 217
              KL   + +  T     +   +  + ++YM+ V +  ++I  G+ +++ L+ +  +R 
Sbjct: 292 VPPKLAAGSIKLQTGLFGPSLEKSTMTCDEYMKAVLEAKEHILAGDIFQIVLSQRFERRT 351

Query: 218 QDIDSLGLYLHLREKNPAPYAAWLNFSNENLCI-CCSSPERFLRLDRNGILEAKPIKGTI 276
              D   +Y  LR  NP+PY  +L       CI   SSPE   R+ +N I+  +P+ GT+
Sbjct: 352 F-ADPFEVYRALRIVNPSPYMTYLQARG---CILVASSPEILTRVKKNRIIN-RPLAGTV 406

Query: 277 ARGATEEEDEQLRWQLQYSEKDQAENLMIVDLLRNDLGRVCEPGSVHVPHLMDVESYATV 336
            RG T +ED  L  QL+  EK  AE++M+VDL RND+G+V +PGSV V  LM++E Y+ V
Sbjct: 407 RRGKTPKEDIMLENQLRNDEKQCAEHIMLVDLGRNDVGKVSKPGSVTVEKLMNIERYSHV 466

Query: 337 HTMVSTIRGKKKSNINAVDCVRAAFPGGSMTGAPKLRSMELLDSLESCSRGIYSGSIGFF 396
             + ST+ G+   ++ + D +RAA P G+++GAPK+++MEL+D LE   RG YSG  G  
Sbjct: 467 MHISSTVTGELLDHLTSWDALRAALPVGTVSGAPKVKAMELIDQLEVTRRGPYSGGFGGI 526

Query: 397 SYNQTFDLNIVIRTIVIHDGEASIGAGGAIVALSNPEDEYNEMLLKTRAPAKAV 450
           S++   D+ + +RTI   +  A + AG  IVA S P DE  E   K  A A+A+
Sbjct: 527 SFSGDMDIALALRTIR-REWVAHLQAGAGIVADSVPADEQRECENKAAALARAI 579


>GSVIVT01032851001 assembled CDS
          Length = 590

 Score =  138 bits (347), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 177/361 (49%), Gaps = 36/361 (9%)

Query: 116 DNFVVIDHRYDDVYIMS---IQEESGTNSSWLDDVEQKLLHLEASATRKLEQQTSQPTTS 172
           D+ +V DH    V+++    +   S    +++D +++    LE   +R   Q    P  S
Sbjct: 217 DDVIVFDHVEKKVHVIHWVRLDLHSSVEKAYVDGMKR----LEILLSRV--QDIDPPKLS 270

Query: 173 FPC-----KAGFHAMKSREQYMEDVNKCLKYIRDGESYELCLTTQIRKRVQDIDSLGLYL 227
             C     ++   ++       E   K  ++IR G+ +++ L+ Q  +R    D   +Y 
Sbjct: 271 PGCVESHIQSFSSSLNESNMTSEAYKKAKEHIRAGDIFQIGLS-QCFERRTFADPFEVYR 329

Query: 228 HLREKNPAPYAAWLNFSNENLCICCSSPERFLRLDRNGILEAKPIKGTIARGATEEEDEQ 287
             R  NP+P+ A+L        +  SSPE    + +N I+  +P+ GT+ RG T  EDE 
Sbjct: 330 AFRVVNPSPFMAYLQ--ARGCVLVASSPEILTHVKKNNIVN-RPLAGTVRRGTTIHEDEM 386

Query: 288 LRWQLQYSEKDQAENLMIVDLLRNDLGRVCEPGSVHVPHLMDVESYATVHTMVSTIRGKK 347
           L  QL   EK  AE++M+VDL RN++G+V + GS+ V  L  VE ++ V  + ST+ G+ 
Sbjct: 387 LEGQLLNDEKQCAEHIMLVDLGRNNVGKVAKFGSLKVEDLKAVECFSHVMHISSTVTGEL 446

Query: 348 KSNINAVDCVRAAFPGGSMTGAPKLRSMELLDSLESCSRGIYSGSIGFFSYNQTFDLNIV 407
           + ++ + + +R+    G+++GAPK+++MEL+D  E   RG Y G  G  S+    ++++ 
Sbjct: 447 QDHLTSWNALRSILHVGAVSGAPKVKAMELIDEWEESRRGPYGGGFGNVSFTGDMEIDLT 506

Query: 408 IRTIVIHDGE------------------ASIGAGGAIVALSNPEDEYNEMLLKTRAPAKA 449
           +RTIV   G                   A   AG  IVA S  +D+  +   K  A A A
Sbjct: 507 LRTIVFPTGNRYDTLFSYKDTKLRREWVAYFQAGAGIVADSVVDDKQRDCEGKAAALACA 566

Query: 450 V 450
           +
Sbjct: 567 I 567


>GSVIVT01008052001 assembled CDS
          Length = 511

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 120/265 (45%), Gaps = 9/265 (3%)

Query: 182 MKSREQYMEDVNKCLKYIRDGESYELCLTTQIRKRV---QDIDSLGLYLHLREKNPAPYA 238
           + S+  +   VN+ L+ I   +S  + +      RV     ID +     L+ +    Y 
Sbjct: 237 VPSKASWNLAVNRALQIIGRADSPLIKVVLARSSRVVTTSHIDPIAWLACLQVEGQNAYQ 296

Query: 239 AWLNFSNENLCICCSSPERFLRLDRNGILEAKPIKGTIARGATEEEDEQLRWQLQYSEKD 298
            +L   +    I  ++PE+     R  I  ++ + GT ARG ++ +D Q+   L  S K+
Sbjct: 297 FFLQPPDAPAFIG-NTPEQLFHRKRLCI-HSEALAGTRARGGSKAQDLQIELDLLSSPKE 354

Query: 299 QAENLMIVDLLRNDLGRVCEPGSVHVPHLMDVESYATVHTMVSTIRGKKKSNINAVDCVR 358
             E  ++ + ++  L  +C   +V V     +     +  + + + G+ +S  +  D + 
Sbjct: 355 DFEFSIVRESIQRKLEAICS--TVWVEPKKAIRKLPRIQHLYAQLSGRLRSEDDEFDILS 412

Query: 359 AAFPGGSMTGAPKLRSMELLDSLESCSRGIYSGSIGFFSYNQTFDLNIVIRTIVIHDGEA 418
           +  P  ++ G P+  +  L+   E   RG+++G +G+F   +T +  + IR+ ++  G  
Sbjct: 413 SLHPTPAVCGFPREEARLLIAETEMFDRGMFAGPVGWFGGGET-EFAVGIRSALVEKGLG 471

Query: 419 S-IGAGGAIVALSNPEDEYNEMLLK 442
             I AG  IV  SN   E+ E+ LK
Sbjct: 472 GLIYAGTGIVRGSNSSLEWEELELK 496