Jatropha Genome Database

JcCB0022951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0022951.10 + phase: 0 /pseudo
         (370 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008968001 assembled CDS                                       243   1e-64
GSVIVT01029761001 assembled CDS                                       224   5e-59
GSVIVT01036983001 assembled CDS                                       204   6e-53
GSVIVT01036981001 assembled CDS                                       193   9e-50

>GSVIVT01008968001 assembled CDS
          Length = 463

 Score =  243 bits (620), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 114/161 (70%), Positives = 135/161 (83%)

Query: 1   MESLKSGYLFPEISIREFEHMQKRPHARLIRLGIGDTTQPIPEIITSAMAEHAYALSTLQ 60
           ME L++GYLF EI  RE EH QK PHA+LI+LGIGDTT+PIP+IITSAMAEHA+ALST++
Sbjct: 67  MERLRNGYLFSEICRRELEHTQKYPHAKLIKLGIGDTTEPIPDIITSAMAEHAHALSTIR 126

Query: 61  GYKGYGAEQGNMDLRMAIAERFYKDMGIKGQEIFVSDGAQADISRLQMLLGSNVTVAVQD 120
           GY+GYGAEQGNM+LR AIA+ FY+DMGIK  E+FVSDGAQ DISR+QMLLGSNVTVAVQD
Sbjct: 127 GYRGYGAEQGNMELRNAIAQTFYRDMGIKANEVFVSDGAQCDISRIQMLLGSNVTVAVQD 186

Query: 121 PSFPGYIDSSVIIGQAGKYEEETGNFQKNCVHKLWIXENFF 161
           PSFP Y+DSSVIIGQ+G ++EETG ++           NFF
Sbjct: 187 PSFPAYMDSSVIIGQSGNFKEETGKYENILYMNCGPESNFF 227



 Score =  223 bits (567), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 100/142 (70%), Positives = 120/142 (84%)

Query: 228 VPKRLLYSNGFPVIKDFNRIVCTCFNGASNIVQAGGLACLSNEGYKAVNSVVNYYKENAK 287
           VP+ LLYSNGFPVIKD+NRIVCTCFNGAS+I QAGGLACLS++GY A+N+V++YYKENAK
Sbjct: 321 VPEELLYSNGFPVIKDYNRIVCTCFNGASSIAQAGGLACLSSDGYLAMNAVLDYYKENAK 380

Query: 288 ILVEAFQSLGLKVYGGKNAPYIWVHFPGMNSWDVFNEILEKTDIVTVPXXXXXXXXXXYI 347
           I+++ F SLGLKV+GGKNAPY+WVHFPG+ SWDVFNEILEKT I+TVP          YI
Sbjct: 381 IIMDTFTSLGLKVHGGKNAPYMWVHFPGLRSWDVFNEILEKTHIITVPGTGFGPGGEGYI 440

Query: 348 RISAFGHRKSILEASARLTKLF 369
           R+SAFG R+S++EAS RL  L 
Sbjct: 441 RVSAFGQRESVIEASRRLKNLL 462


>GSVIVT01029761001 assembled CDS
          Length = 440

 Score =  224 bits (571), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 102/147 (69%), Positives = 126/147 (85%)

Query: 1   MESLKSGYLFPEISIREFEHMQKRPHARLIRLGIGDTTQPIPEIITSAMAEHAYALSTLQ 60
           ME L++GYLFPEI++RE EHM+K P+A++I LGIGDTT+PIP+I+TS+MA HA  LST++
Sbjct: 44  MEKLRNGYLFPEIAMRELEHMKKYPNAKVISLGIGDTTEPIPDIVTSSMANHARRLSTVE 103

Query: 61  GYKGYGAEQGNMDLRMAIAERFYKDMGIKGQEIFVSDGAQADISRLQMLLGSNVTVAVQD 120
           GY+GYGAEQGN  LR AIAE  Y D+ IK  EIFVSDG+Q DISRLQ+LLGSNVT+AVQD
Sbjct: 104 GYRGYGAEQGNKALRKAIAETLYGDLPIKDTEIFVSDGSQCDISRLQLLLGSNVTIAVQD 163

Query: 121 PSFPGYIDSSVIIGQAGKYEEETGNFQ 147
           P+FP YIDSSVIIGQ G +++ETG +Q
Sbjct: 164 PTFPAYIDSSVIIGQTGDFQDETGKYQ 190



 Score =  214 bits (544), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 100/143 (69%), Positives = 113/143 (79%)

Query: 228 VPKRLLYSNGFPVIKDFNRIVCTCFNGASNIVQAGGLACLSNEGYKAVNSVVNYYKENAK 287
           VP  LL+SNGFPVIKD+NRIVCTCFNGAS+I QAGGLACLS++G  AV SVV+YYKENAK
Sbjct: 298 VPDELLFSNGFPVIKDYNRIVCTCFNGASSIAQAGGLACLSSDGLMAVQSVVDYYKENAK 357

Query: 288 ILVEAFQSLGLKVYGGKNAPYIWVHFPGMNSWDVFNEILEKTDIVTVPXXXXXXXXXXYI 347
           IL + F SLGL VYGG NAPY WVHFPGM SWDVF E+LEKT I+TVP          +I
Sbjct: 358 ILGDTFTSLGLDVYGGINAPYAWVHFPGMKSWDVFTELLEKTHIITVPGCGFGPGGEEHI 417

Query: 348 RISAFGHRKSILEASARLTKLFN 370
           R+SAFGHR+ ILEAS RL  L +
Sbjct: 418 RVSAFGHRECILEASRRLKSLLS 440


>GSVIVT01036983001 assembled CDS
          Length = 397

 Score =  204 bits (518), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 92/142 (64%), Positives = 110/142 (77%)

Query: 228 VPKRLLYSNGFPVIKDFNRIVCTCFNGASNIVQAGGLACLSNEGYKAVNSVVNYYKENAK 287
           VPK LLYS+GFPV KDFNRIVCT FNGASNI QAGGLACLS EG +A++ VV +Y+EN  
Sbjct: 255 VPKELLYSDGFPVAKDFNRIVCTTFNGASNISQAGGLACLSPEGLEAMHKVVGFYQENTN 314

Query: 288 ILVEAFQSLGLKVYGGKNAPYIWVHFPGMNSWDVFNEILEKTDIVTVPXXXXXXXXXXYI 347
           I++E F SLG  VYGGKNAPY+WVHFPG +SWDVF+EILEKT +VT P          +I
Sbjct: 315 IIMETFTSLGFSVYGGKNAPYVWVHFPGQSSWDVFSEILEKTHVVTTPGSGFGPAGDGFI 374

Query: 348 RISAFGHRKSILEASARLTKLF 369
           R+SAFGHR ++LEA  R  +L+
Sbjct: 375 RVSAFGHRGNVLEACKRFKQLY 396



 Score =  192 bits (487), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 92/150 (61%), Positives = 118/150 (78%), Gaps = 3/150 (2%)

Query: 1   MESLKSGYLFPEISIREFEHMQKRPHARLIRLGIGDTTQPIPEIITSAMAEHAYALSTLQ 60
           M  L++GYLFPEI+ R   HM K P A++I LGIGDTT+PIPE+ITS MA+ A ALSTL+
Sbjct: 1   MAKLQAGYLFPEIARRRSAHMLKYPDAQVISLGIGDTTEPIPEVITSGMAKKANALSTLE 60

Query: 61  GYKGYGAEQGNMDLRMAIAERFYKDMGIKGQEIFVSDGAQADISRLQMLLGSNVTVAVQD 120
           GY GYGAEQG   LR AIA  +Y D+ I+  +IFVSDGA++DISRLQ++ GSNVT+AVQD
Sbjct: 61  GYSGYGAEQGENRLRAAIASTYYGDLSIEESDIFVSDGAKSDISRLQVMFGSNVTMAVQD 120

Query: 121 PSFPGYIDSSVIIGQAGKYE---EETGNFQ 147
           PS+P Y+DSSVI+GQ G+++   E+ GN +
Sbjct: 121 PSYPAYVDSSVILGQTGQFQKDVEKYGNIE 150


>GSVIVT01036981001 assembled CDS
          Length = 469

 Score =  193 bits (491), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 92/150 (61%), Positives = 118/150 (78%), Gaps = 3/150 (2%)

Query: 1   MESLKSGYLFPEISIREFEHMQKRPHARLIRLGIGDTTQPIPEIITSAMAEHAYALSTLQ 60
           M  L++GYLFPEI+ R   HM K P A++I LGIGDTT+PIPE+ITS MA+ A+ALSTL+
Sbjct: 73  MAKLQAGYLFPEIARRRSAHMLKYPDAQVISLGIGDTTEPIPEVITSGMAKKAHALSTLE 132

Query: 61  GYKGYGAEQGNMDLRMAIAERFYKDMGIKGQEIFVSDGAQADISRLQMLLGSNVTVAVQD 120
           GY GYGAEQG   LR AIA  FY D+ I+  +IFVSDGA++DISRLQ++ GSNVT+AVQD
Sbjct: 133 GYSGYGAEQGEKQLRAAIASTFYGDLSIEESDIFVSDGAKSDISRLQVMFGSNVTMAVQD 192

Query: 121 PSFPGYIDSSVIIGQAGKYE---EETGNFQ 147
           PS+P Y+D SVI+GQ G+++   E+ GN +
Sbjct: 193 PSYPAYVDLSVILGQTGQFQKDVEKYGNIE 222



 Score =  193 bits (490), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 87/142 (61%), Positives = 105/142 (73%)

Query: 228 VPKRLLYSNGFPVIKDFNRIVCTCFNGASNIVQAGGLACLSNEGYKAVNSVVNYYKENAK 287
           VPK LLYS+GFPV KDFNRI CT FN ASNI QA GLACLS EG +A++ +V +YKEN  
Sbjct: 327 VPKELLYSDGFPVAKDFNRIECTTFNAASNISQASGLACLSPEGLEAMHKLVGFYKENTN 386

Query: 288 ILVEAFQSLGLKVYGGKNAPYIWVHFPGMNSWDVFNEILEKTDIVTVPXXXXXXXXXXYI 347
           I++E F SLG  VYGGKNAPY+WVHFPG +SWDVF+EILEKT +VT P          +I
Sbjct: 387 IIMETFTSLGFSVYGGKNAPYVWVHFPGQSSWDVFSEILEKTHVVTTPGSGFGPAGDGFI 446

Query: 348 RISAFGHRKSILEASARLTKLF 369
           R+ AF HR ++LEA  R  +L+
Sbjct: 447 RVCAFSHRGNVLEACKRFKRLY 468