Jatropha Genome Database

JcCB0022671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0022671.10 + phase: 2 /partial
         (423 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011024001 assembled CDS                                       396   e-110

>GSVIVT01011024001 assembled CDS
          Length = 878

 Score =  396 bits (1017), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/411 (54%), Positives = 260/411 (63%), Gaps = 73/411 (17%)

Query: 15  LVRVFFNQLHSLISPADFEENQAQEIKFERSISLDKFSKLDINEHHQEAQSTVGYS-PLL 73
           L+RVFF ++ SLI+P + EE+     K E S+S DKFS+LDI EHHQEAQST G S PLL
Sbjct: 536 LLRVFFKEIQSLITPTELEES-----KLEGSMSWDKFSRLDIGEHHQEAQSTGGCSSPLL 590

Query: 74  KKETSTLNNVSSNQKEEMSENSAFQEEQLNFKNERMNRGDDAMKEDKGKAGGTASAVSRE 133
           +K    + N S+N KE  SENS  QE    F    M++ DD M++D+ K         R+
Sbjct: 591 RKAAPDVTNRSANLKEGTSENSTLQEVD-QFFGRNMDQADDVMRQDRRKDKNKLGRALRD 649

Query: 134 MDRDFQNVETSGSDTSSTRGKNFVGQMGNGDFAKSSDLVKENGRQGVQEDGKVGTIQFEE 193
            ++D QNVETSGSD+SSTRGKN   Q+ N +F KS++ +K +G                 
Sbjct: 650 GEKDVQNVETSGSDSSSTRGKNSTDQIDNSEFPKSNEHIKASG----------------- 692

Query: 194 KPRKRKRTIMNDYQMSLIEKALVDEPDMQRNSASIQRWADKLSIHGSEVTFSQLKNWLNN 253
              KRKRTIMND QM+LIEKALVDEPDMQRN+A IQ WADKLS HG E+T SQLKNWLNN
Sbjct: 693 ---KRKRTIMNDTQMTLIEKALVDEPDMQRNAALIQSWADKLSFHGPELTASQLKNWLNN 749

Query: 254 RKARLARAGKDVRAPVEFDSAHSVKQ-GMSTHS-HDSPESRGEDNAPSGARLVPSTSRIG 311
           RKARLARA KDVR   E DS    KQ G    S HDSPES                    
Sbjct: 750 RKARLARAAKDVRVASEVDSTFPDKQVGSGVGSLHDSPES-------------------- 789

Query: 312 TSENAETSLAEFVGIGAAEFVQCKPGQYVVLVDKQGEEIGKAKVYQVQGKWYGKNLEESE 371
                                   PGQYVVL+D QG++IGK KV+QVQGKWYGKNLEES+
Sbjct: 790 ------------------------PGQYVVLLDGQGDDIGKGKVHQVQGKWYGKNLEESQ 825

Query: 372 TCVVDVTELKADRWVRLPYPSEATGTSFSEAETKLGVMRVLWDSNKIFMFR 422
           TCVVDV ELKA+RW RLP+PSE TGTSF EAETKLGVMRV WDSNK+ + R
Sbjct: 826 TCVVDVMELKAERWSRLPHPSETTGTSFDEAETKLGVMRVSWDSNKLCILR 876