Jatropha Genome Database

JcCB0022491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0022491.10 - phase: 0 /pseudo
         (311 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019729001 assembled CDS                                       100   2e-21
GSVIVT01034224001 assembled CDS                                        57   8e-09

>GSVIVT01019729001 assembled CDS
          Length = 298

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 51/78 (65%)

Query: 1  MPESEXXXXXXXXXXXXXXXXXXLFSSLRVDSLSYDRKSMPRCKCLPVNAPSWGQTHTCF 60
          M E+E                  LFSSLRVDSLSYDRKSMPRCKCLPV A SW  + TCF
Sbjct: 1  MAEAETGTPTASAPATPGTPGGPLFSSLRVDSLSYDRKSMPRCKCLPVGAASWAPSPTCF 60

Query: 61 TDFPAPDVSLTRKMDINF 78
          TDFPAPDVSLTRK+   F
Sbjct: 61 TDFPAPDVSLTRKLGAEF 78



 Score = 87.4 bits (215), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 236 VGRNCSWSNCCAKHSCCG-MNPVRTLGPAVAAGNYKAIWIYLVAPIXXXXXXXXXXXXVK 294
           VG     +   A  S  G MNPVRTLGPAVAAGNY+AIWIYLVAP             VK
Sbjct: 222 VGATVMLNILVAGPSSGGSMNPVRTLGPAVAAGNYRAIWIYLVAPTLGAVAGAAIYTAVK 281

Query: 295 LREDEADPPRQVRSFRR 311
           LR DE + PRQVRSFRR
Sbjct: 282 LRADEGEQPRQVRSFRR 298


>GSVIVT01034224001 assembled CDS
          Length = 354

 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 33/57 (57%)

Query: 245 CCAKHSCCGMNPVRTLGPAVAAGNYKAIWIYLVAPIXXXXXXXXXXXXVKLREDEAD 301
              + +   MNPVRTLGPA+A  N+KAIW+YL API            VKL E++ +
Sbjct: 241 IAGETTGASMNPVRTLGPAIAVNNFKAIWVYLTAPILGALCGAGVYTAVKLPEEDGN 297