Jatropha Genome Database

JcCB0022161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0022161.10 - phase: 0 /pseudo
         (760 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018715001 assembled CDS                                      1052   0.0  
GSVIVT01018693001 assembled CDS                                       226   2e-59
GSVIVT01033181001 assembled CDS                                       128   1e-29
GSVIVT01032195001 assembled CDS                                        57   2e-08

>GSVIVT01018715001 assembled CDS
          Length = 1171

 Score = 1052 bits (2721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/800 (68%), Positives = 611/800 (76%), Gaps = 85/800 (10%)

Query: 1   MYIKEICLEGFKSYATRTVVQGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60
           MYIKEICLEGFKSYATRT                                          
Sbjct: 1   MYIKEICLEGFKSYATRT------------------------------------------ 18

Query: 61  NLQELVYKQGQAGITKATVSIVFDNSDRNRSPLGYEDHSEITVTRQIVVGGRNKYLINGK 120
              ELVYKQGQAGITKATVS+VFDNSDR+RSPLGY+D  EITVTRQIVVGGRNKYLING 
Sbjct: 19  ---ELVYKQGQAGITKATVSVVFDNSDRSRSPLGYQDCPEITVTRQIVVGGRNKYLINGH 75

Query: 121 LAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKDA 180
           LAQPS+VQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKK+A
Sbjct: 76  LAQPSRVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEA 135

Query: 181 ALKTLEKKQSKVDEINKLLDQEILPALEKLRKERIQYMQWANGNAELDRLKRFCIAYEYV 240
           ALKTLEKKQSKVDEI+KLLDQEILPALEKLRKER+QYMQWANGNAELDRLKRFCIAYE+V
Sbjct: 136 ALKTLEKKQSKVDEIDKLLDQEILPALEKLRKERMQYMQWANGNAELDRLKRFCIAYEFV 195

Query: 241 QAEEIRENTIGEVEQIKAKISEIDGDTEKTQVEIQEMETKISKLTAEKEASMGGEVKTLS 300
           QAE+IR++ +  VEQ+K KI++I+   ++ QVEIQEMET++S LTAEKEASMGGEVK LS
Sbjct: 196 QAEKIRDSAVSGVEQVKTKIADIEDSHKRMQVEIQEMETQVSNLTAEKEASMGGEVKVLS 255

Query: 301 DKVHVLSQDLVREVSVLHNKEDTLRGENENAEKIVDGIEDLKQSVEEKATAVRKSEEGAA 360
           + V  LS++LV++ SVL N+EDTL+ E ENA KIV GIEDLKQSVEE+A+AV+++E+GAA
Sbjct: 256 ENVDALSRELVKQASVLKNQEDTLKSEKENAAKIVRGIEDLKQSVEERASAVKRAEDGAA 315

Query: 361 DLEKRVKELSKALEEHEKDYQGVLAGKSSGNEEKCLEDQLAEAKVAVGNAETELKQLKTK 420
           DL++RV+ELSK LEE E++YQGVLAGKSSG+EEKCLEDQLA+AKVAVG+AETELKQL TK
Sbjct: 316 DLKQRVEELSKNLEECEREYQGVLAGKSSGSEEKCLEDQLADAKVAVGSAETELKQLNTK 375

Query: 421 INHCXXXXXXXXXXXXXXRXXXXXXXXXXXXRSKDVENVNLALESLPYKEGQMEALQKDR 480
           I HC                           R KDVEN+ +ALESL YKEGQMEALQK+R
Sbjct: 376 ITHCEKDLKEKTNELISKHEEAVSVENELNVRRKDVENIKMALESLTYKEGQMEALQKER 435

Query: 481 ASEMDFLQKLKDKIRDLSAQLSNVQFTYRDPVKNFDRSKVKGVVAKLIKVKDSSTMTALE 540
           A E+  +Q+LKD+ R LSAQL NVQFTY DP+KNFDRS+VKGVVAKLIKVKDSSTMTALE
Sbjct: 436 ALELGMVQELKDETRILSAQLGNVQFTYHDPLKNFDRSRVKGVVAKLIKVKDSSTMTALE 495

Query: 541 VTAGGKLFNVVVDTENTGKQLLQNGELRRRVTIIPLNKIQSHTVPHRVQQAAIRLVGKGN 600
           V AGGKLFNVVVDTENTGK LLQNG+LRRRVTIIPLNKIQSHTVP RVQ+ A RLVGK N
Sbjct: 496 VAAGGKLFNVVVDTENTGKLLLQNGDLRRRVTIIPLNKIQSHTVPLRVQKEASRLVGKEN 555

Query: 601 AELALSLVGYDEDLRNAMEYVFGSTFVCKTMDAAKE------------------------ 636
           AELALSLVGYDE+L++AMEYVFGSTFVCK +DAAKE                        
Sbjct: 556 AELALSLVGYDEELKSAMEYVFGSTFVCKRIDAAKEYVKNCMVKIMWLNWPLYIEGSMWD 615

Query: 637 ----------------IAFNREIRTPSVTVDGDIFQPSXXXXXXXXXXXXXXXRQLHELA 680
                           +AFNR+I TPSVT+DGDIFQPS               RQLH LA
Sbjct: 616 LLGICLMLINLKVDRMVAFNRDISTPSVTLDGDIFQPSGLLTGGSRKGGGDLLRQLHALA 675

Query: 681 NAESDLLLHQRKLSEIEAKITELLPRHKKFMELKKHLELKQYDLSLFQGRAEQNEHHKLG 740
            AES L  HQ+KLSEIEAKI +L+P  K+FM+LK  LELK YDLSLFQ RAEQNEHHKL 
Sbjct: 676 EAESKLSTHQQKLSEIEAKIADLMPLQKRFMDLKARLELKSYDLSLFQNRAEQNEHHKLS 735

Query: 741 ELVKKIEQELXRSKFYSQRK 760
           ELVK+IEQEL  SK  ++ K
Sbjct: 736 ELVKRIEQELGESKSAAREK 755


>GSVIVT01018693001 assembled CDS
          Length = 125

 Score =  226 bits (577), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 108/125 (86%), Positives = 116/125 (92%)

Query: 1   MYIKEICLEGFKSYATRTVVQGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60
           MYIK+ICLEGFKSYATRTVV GFDP+FNAITGLNGS KSNILDSICFVLGITNL+QV A+
Sbjct: 1   MYIKDICLEGFKSYATRTVVPGFDPYFNAITGLNGSCKSNILDSICFVLGITNLRQVLAS 60

Query: 61  NLQELVYKQGQAGITKATVSIVFDNSDRNRSPLGYEDHSEITVTRQIVVGGRNKYLINGK 120
           NLQ+LVYKQGQAGITKATVS+VFDNSDR+RSPLGY+D  EIT  RQIVVGGRNKYLIN  
Sbjct: 61  NLQKLVYKQGQAGITKATVSVVFDNSDRSRSPLGYQDCPEITKIRQIVVGGRNKYLINRH 120

Query: 121 LAQPS 125
           LAQPS
Sbjct: 121 LAQPS 125


>GSVIVT01033181001 assembled CDS
          Length = 1205

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/268 (32%), Positives = 153/268 (57%), Gaps = 23/268 (8%)

Query: 1   MYIKEICLEGFKSYATRTVVQGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60
           MYIK++ +EGFKSY  +   + F    N + G NGSGK+N   +I FVL     Q +R+ 
Sbjct: 1   MYIKQVIIEGFKSYREQIATEPFSSKVNCVVGANGSGKTNFFHAIRFVLSDL-FQNLRSE 59

Query: 61  NLQELVYKQGQAGITKATVSIVFDNSDRNRSPLGYEDHSEITVTRQIVVGGRNKYLINGK 120
           +   L+++     +  A V IVFDNSD NR P+   D  E+ + R I +  +++Y ++GK
Sbjct: 60  DRHALLHEGAGHQVLSAFVEIVFDNSD-NRIPV---DKEEVRLRRTIGLK-KDEYFLDGK 114

Query: 121 LAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKDA 180
               ++V NL  S   + +NP++++ QG+I  +  MK  E L +L+E  GTR+YE ++  
Sbjct: 115 HITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRE 174

Query: 181 ALKTLEK---KQSKVDEINKLLDQEILPALEKLRKERIQYMQWANGNAELDRLKRFCIAY 237
           +LK +++   K+ ++ ++ + LD+ +    E+  + R +Y Q       LD+ ++   + 
Sbjct: 175 SLKIMQETGNKRKQIIQVVQYLDERLKELDEEKEELR-KYQQ-------LDKQRK---SL 223

Query: 238 EY-VQAEEIRE--NTIGEVEQIKAKISE 262
           EY +  +E+ +  + +GEVE+ + K+SE
Sbjct: 224 EYTIYDKELHDARHKLGEVEEARTKVSE 251


>GSVIVT01032195001 assembled CDS
          Length = 1051

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 132/301 (43%), Gaps = 49/301 (16%)

Query: 3   IKEICLEGFKSYATRTVVQGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRAANL 62
           I EI L  F ++       G     N + G NGSGKS+++ +I   LG       RA+++
Sbjct: 23  ITEIELHNFMTFNDLKCKPG--SRLNLVIGPNGSGKSSLVCAIALGLGGDPQLLGRASSI 80

Query: 63  QELVYKQGQAGITKATVSIVFDNSDRNRSPLGYEDHSEITVTRQIVVGGRNKYLINGKLA 122
              V +  ++G  K ++              G  +  +IT+ R+I    ++++L NGK+ 
Sbjct: 81  GAYVKRGEESGYIKISLR-------------GDTEEEQITIMRKIDTRNKSEWLFNGKVV 127

Query: 123 QPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKDA-A 181
               V  +     + VNN    + Q R+++   + P ++L   E+A G      +  A  
Sbjct: 128 PKKDVIEIVRRFNIQVNNLTQFLPQDRVSEFAKLTPVQLLEETEKAVGDPQLPVQHCALV 187

Query: 182 LKTLE-KKQSKVDEINKLLDQEILPALEKLRKERIQYMQWANGNAELDRLKRFCIAYEYV 240
           LK+ E KK  K  E N     E+L  L+ L  ER           +++R+++        
Sbjct: 188 LKSRELKKLEKAVEQNG----EMLNCLKTLNSER---------EKDVERVRQ-------- 226

Query: 241 QAEEIRENTIGEVEQIKAKISEIDGDTEKTQVEIQEMETKISKLTAEKEASMGGEVKTLS 300
                R+  + +VE +K K+  +  D +K    ++ ME K  +  A+K+  +    KTL+
Sbjct: 227 -----RQELLAKVESMKKKLPWLKYDMQK----VRYMEAKEQENDAKKK--LDEAAKTLN 275

Query: 301 D 301
           D
Sbjct: 276 D 276