Jatropha Genome Database

JcCB0019891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0019891.10 + phase: 1 /partial
         (584 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022250001 assembled CDS                                       880   0.0  

>GSVIVT01022250001 assembled CDS
          Length = 1032

 Score =  880 bits (2274), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/576 (73%), Positives = 477/576 (82%), Gaps = 4/576 (0%)

Query: 1    RLFKKIELSESIRYASGDPIESWLNALLCLDVTNXXXXXXXXXXXXECNLYYVNRDTLFS 60
            RLFKKIELSESIRYASGDPIESWLN LLCLDV N            EC+LYYVNRDTLFS
Sbjct: 448  RLFKKIELSESIRYASGDPIESWLNTLLCLDVANSIPNISRLPPPSECDLYYVNRDTLFS 507

Query: 61   YHKDSELFLQRMMALYVASHYKNSPNDLQLLADAPAHHLFVLLGPVDESKNQLPDILCVI 120
            YHKDSELFLQRMMALYVASHYKNSPNDLQL+ADAPAHHLFVLLGPVDESKN LPDILCVI
Sbjct: 508  YHKDSELFLQRMMALYVASHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNHLPDILCVI 567

Query: 121  QVCLEGQISRQSAIKSLSDGHQPFGDQIPWKFCEQFRDTGFPSLSGARIVRIATHPSAMR 180
            QVCLEG ISR+SAIKSLSDG QPFGDQIPWKFCEQF+DT FP+LSGARIVRIATHPSAMR
Sbjct: 568  QVCLEGHISRKSAIKSLSDGRQPFGDQIPWKFCEQFQDTVFPTLSGARIVRIATHPSAMR 627

Query: 181  LGYGSTAVELLTRYYEGQFTPISEVDFENNVETPQVRIMEAAEKVSLLEENIKPRTDLPH 240
            LGYGS AVELLTRY+EGQ TPISE+D EN VETP VR+ EAAEKVSLLEENIKPRTDLPH
Sbjct: 628  LGYGSAAVELLTRYFEGQLTPISEIDVENTVETPHVRVTEAAEKVSLLEENIKPRTDLPH 687

Query: 241  LLVTLRERRPEKLHYLGVSFGLTLDLFRFWGKHKFAPFYIGQIPSTVTGEHTCMVLKPLN 300
            LLV L ER+PEKLHY+GVSFGLTLDLFRFW +HKFAPFYIGQI STVTGEHTCMVLKPLN
Sbjct: 688  LLVHLHERQPEKLHYIGVSFGLTLDLFRFWRRHKFAPFYIGQIQSTVTGEHTCMVLKPLN 747

Query: 301  NDDFEVSGSDEWGFFGPFYQAFRLRFSRLLESCFRAMEYKLAMSVLAPKINYADTDTKAT 360
            ND+ EVSGSD+WGFFGPFYQ F+ RF+RLL + FR MEYKLAMS+L PKIN+ D +    
Sbjct: 748  NDEIEVSGSDQWGFFGPFYQDFKRRFARLLGASFRTMEYKLAMSILDPKINFQDVEPTMP 807

Query: 361  SSTPEGFWKSLSFEITADDMQRLKAYTDNLADYRLILDSVSVLARLYFRGKLPVTLSYVQ 420
             S   GF  SL+   +  DM+RL+AYT+NLAD+ +ILD V +L   Y++ KLPVTLSY Q
Sbjct: 808  PSN--GFLTSLNGIFSPHDMKRLEAYTNNLADFHMILDLVPILVHQYYQEKLPVTLSYAQ 865

Query: 421  ASILLCIGLQKQDFTYIEGQLKLERTQILSLFMKAMRRFHKYLYGIASDEIQSTLPQLKE 480
            AS+LLCIGLQ Q+ +YIEG++KLER QILSLF+K+M++ HKYLYGIAS EI+STLP+L+E
Sbjct: 866  ASVLLCIGLQNQNISYIEGEIKLERQQILSLFIKSMKKLHKYLYGIASKEIESTLPRLRE 925

Query: 481  RVLEPLKISVEDDLNEAAKQVEDEMKTKTEA-LNPELLQQYAIVDRDGDFENAXXXXXXX 539
             V+EP  ISV++DLN+AAKQVED MK KTE+ L+P+ LQQYAI DR+ DFE A       
Sbjct: 926  IVMEPHTISVDEDLNDAAKQVEDGMKAKTESLLDPDFLQQYAIADREADFEKALQNGGGK 985

Query: 540  XXXXXXXXXXXXXTKVEKHGKQE-SHKKGKRRKGDH 574
                         TK+EKHGKQE SHK G++R  DH
Sbjct: 986  LPSSGLISVKSSRTKMEKHGKQEKSHKSGEKRSKDH 1021