Jatropha Genome Database

JcCB0019451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0019451.20 - phase: 2 /TE/partial
         (1105 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018780001 assembled CDS                                       231   2e-60

>GSVIVT01018780001 assembled CDS
          Length = 1567

 Score =  231 bits (588), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 140/435 (32%), Positives = 217/435 (49%), Gaps = 29/435 (6%)

Query: 279  NAPATFQAVMNDLFRPYLRKFVLVFFDDILVCSNSWDSXXXXXXXXXXXXCDNKLQLNQK 338
            N PA F  +MN +FR YL +FV+VF DDIL+ S S +               ++L     
Sbjct: 972  NVPAAFMDLMNRVFRAYLDQFVIVFVDDILIYSRSLEEHKQHLVTTLGTLRRHQLYGKLD 1031

Query: 339  KCFFGRKLVEYLGHIISKDGVAMDPSKVSSILQWPIPKSTKAVRGFLGITGYYRRFIANY 398
            K  F    V +LGH++S+ G+A+D SKV ++ +W  P +   VR FLG+ GYYRRF+ ++
Sbjct: 1032 KSEFWLTEVNFLGHVVSEAGIAVDHSKVEAVQEWQRPTNVFEVRSFLGLAGYYRRFVEDF 1091

Query: 399  GQLARPLTTLLKDAQAKFAWPQDAQDAFIALKHAMTTSPVLAMPDFSKPFIVETDASKSG 458
             ++A P+T L +    KF W ++ ++AF  LK  +TT+PVL  P   + F +  DAS  G
Sbjct: 1092 SRIAAPMTRLTRKG-VKFDWNEECENAFQELKRKLTTAPVLTAPISGELFTIYCDASTVG 1150

Query: 459  IGVVLHQDNRPLAYFSKATGDPAMSRSAYENELMALVLAIRHWRPYLIGRCFTVRTDQKS 518
            +G VL Q  + +AY S+       +  A++ EL A+V A++ WR YL G  F V +D KS
Sbjct: 1151 LGCVLMQQGKVVAYASRQLKQHERNYPAHDLELAAVVFALKTWRHYLYGEKFEVYSDHKS 1210

Query: 519  LMHLLQQNVSTPAQQYWLAKLMGYNFNIEYKTEKTNRAADALSRCH---------DEVEF 569
            L ++  Q      Q+ W+  L  Y+F + Y+  K N  ADALSR            E E 
Sbjct: 1211 LKYIFTQKDLNSRQRRWMETLEDYDFALHYQPGKANVVADALSRKSYGQLSSLGLREFEM 1270

Query: 570  QAI------------SGPQWIDWDAISKEIQQ-------DSTLSKIISEISSGKPSQAHY 610
             A+             GP      A    IQ+       D  L K+ +++ +G+  +   
Sbjct: 1271 HAVIEDFELCLSQEGRGPCLYSISARPMIIQRIVEAQVHDEFLEKVKAQLVAGEIDENWS 1330

Query: 611  SLIHGNLFYKGRLVLPPSSKWIPKIIEEFHSTPLGGHSGAYRSYKRVASNFYWPGMMGTI 670
                G++ +KG+L +P   +   +++ + H      H G  + Y+ +   F+W GM   I
Sbjct: 1331 MYEDGSVRFKGKLCVPKDVELRNELLADAHRAKYTIHPGNTKMYQDLKRQFWWSGMKRDI 1390

Query: 671  KKFVAACLICQTHKY 685
             +FVA C I   + Y
Sbjct: 1391 AQFVANCQILLVNFY 1405



 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 9/180 (5%)

Query: 2   VCSNLQLFLGSYTISGDFFIFPLRGVDIILGVAWLETLGDVQVNWQRLTMKFLHQNQLVE 61
           +C    + L    ++ D  I  + G D+ILG+ WL     V ++  R  + F       E
Sbjct: 476 ICKGCVITLADRALNVDLRILDMTGYDVILGMDWLAVYRAV-IDCHRRRIIFCLPEGF-E 533

Query: 62  LCGDPSLTRGTILAKSFSKVRNVSFSTVLLELSIDPPPISCVSTVENSDSESQQLQELLA 121
           +C       G  ++  FS+  +  +  VL + SI+   ++C+   E +  +  ++  +  
Sbjct: 534 VC----FVGGKCVSLPFSQ-SDPCYQYVLRKGSINF--LACLRGKEKAQKDITEIPMVRK 586

Query: 122 AHAFVFQEIYGLPPRRSTDHRIALQPGQGPISVKPYRYGHIQKDEIERLVHDMLSAGIIK 181
                  E+ GLPP R  D  I + PG  PISV PYR   ++  E++  + ++L  G I+
Sbjct: 587 FQDVFPDELPGLPPHREFDFSIEVYPGTDPISVSPYRMAPLELKELKTQLDELLGRGFIR 646