Jatropha Genome Database

JcCB0019451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0019451.10 + phase: 0 
         (188 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018365001 assembled CDS                                       387   e-108
GSVIVT01031375001 assembled CDS                                       384   e-107
GSVIVT01030885001 assembled CDS                                       249   6e-67
GSVIVT01007671001 assembled CDS                                       130   3e-31
GSVIVT01023839001 assembled CDS                                        87   4e-18
GSVIVT01036156001 assembled CDS                                        51   3e-07
GSVIVT01035364001 assembled CDS                                        50   7e-07
GSVIVT01007870001 assembled CDS                                        49   2e-06

>GSVIVT01018365001 assembled CDS
          Length = 430

 Score =  387 bits (994), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 182/188 (96%), Positives = 186/188 (98%)

Query: 1   MRSKDRIAYFYDGDVGGVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVEL 60
           MRSKDRI+YFYDGDVG VYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVEL
Sbjct: 1   MRSKDRISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVEL 60

Query: 61  AQFHSADYVEFLHRITPDTQHLFANELVRYNLGEDCPVFENLFEFCQIYAGGTIDAARRL 120
           AQFHSADYVEFLHRITPDTQHLF+NEL RYNLGEDCPVFENLFEFCQIYAGGTIDAARRL
Sbjct: 61  AQFHSADYVEFLHRITPDTQHLFSNELARYNLGEDCPVFENLFEFCQIYAGGTIDAARRL 120

Query: 121 NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE 180
           NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLK+HARVLYIDIDVHHGDGVE
Sbjct: 121 NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKHHARVLYIDIDVHHGDGVE 180

Query: 181 EAFFFTDR 188
           EAF+FTDR
Sbjct: 181 EAFYFTDR 188


>GSVIVT01031375001 assembled CDS
          Length = 430

 Score =  384 bits (987), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 181/188 (96%), Positives = 185/188 (98%)

Query: 1   MRSKDRIAYFYDGDVGGVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVEL 60
           MRSKDRI+YFYDGDVG VYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVEL
Sbjct: 1   MRSKDRISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVEL 60

Query: 61  AQFHSADYVEFLHRITPDTQHLFANELVRYNLGEDCPVFENLFEFCQIYAGGTIDAARRL 120
           AQFHSADYVEFLHRITPDTQHLF NEL +YNLGEDCPVFENLFEFCQIYAGGTIDAARRL
Sbjct: 61  AQFHSADYVEFLHRITPDTQHLFLNELAKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL 120

Query: 121 NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE 180
           NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLK+HARVLYIDIDVHHGDGVE
Sbjct: 121 NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKHHARVLYIDIDVHHGDGVE 180

Query: 181 EAFFFTDR 188
           EAF+FTDR
Sbjct: 181 EAFYFTDR 188


>GSVIVT01030885001 assembled CDS
          Length = 502

 Score =  249 bits (635), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 114/185 (61%), Positives = 143/185 (77%)

Query: 4   KDRIAYFYDGDVGGVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQF 63
           K +++YFYD +VG  Y+G  HPMKPHR+ MTH L+  Y L + M++ +P  A   +L +F
Sbjct: 16  KRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPCPARDRDLCRF 75

Query: 64  HSADYVEFLHRITPDTQHLFANELVRYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQ 123
           H+ DYV FL  ITP+TQ     +L R+N+GEDCPVF+ L+ FCQ YAGG++  A +LN+ 
Sbjct: 76  HADDYVSFLRGITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHG 135

Query: 124 LCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAF 183
            CDIAINWAGGLHHAKKCEASGFCY+ND+VL ILELLK H RVLY+DID+HHGDGVEEAF
Sbjct: 136 FCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAF 195

Query: 184 FFTDR 188
           + TDR
Sbjct: 196 YTTDR 200


>GSVIVT01007671001 assembled CDS
          Length = 365

 Score =  130 bits (328), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 88/156 (56%), Gaps = 51/156 (32%)

Query: 33  MTHHLVLSYELHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFANELVRYNL 92
           M H+LV+ Y LH++MEI RP  A P ++ ++                       L R+NL
Sbjct: 1   MAHNLVVHYALHRRMEINRPFPAGPDDIRRY-----------------------LKRFNL 37

Query: 93  GEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDL 152
                                       N +  DIA+NWAGGLHHAKK EASGFCY+ND+
Sbjct: 38  ----------------------------NRRDADIALNWAGGLHHAKKSEASGFCYVNDI 69

Query: 153 VLGILELLKYHARVLYIDIDVHHGDGVEEAFFFTDR 188
           VLGILELLK H RVLY+DID+HHGDGVEEAFF TDR
Sbjct: 70  VLGILELLKVHRRVLYVDIDIHHGDGVEEAFFTTDR 105


>GSVIVT01023839001 assembled CDS
          Length = 394

 Score = 87.0 bits (214), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 73/163 (44%), Gaps = 71/163 (43%)

Query: 26  MKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFAN 85
           MKPHR+ MTH L+  Y L + M++ +P                      ITP+TQ     
Sbjct: 1   MKPHRIRMTHALLAHYGLLQHMQVLKPG---------------------ITPETQQ---- 35

Query: 86  ELVRYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASG 145
                                               +QL  + +  A          ASG
Sbjct: 36  ------------------------------------DQLRQLKLGGA----------ASG 49

Query: 146 FCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFFFTDR 188
           FCY+ND+VL ILELLK H RVLY+DID+HHGDGVEEAF+ TDR
Sbjct: 50  FCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDR 92


>GSVIVT01036156001 assembled CDS
          Length = 348

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 136 HHAKKCEASGFCYINDLVLGI-LELLKYHARVLYIDIDVHHGDGVEEAFFFTDR 188
           HHA+  +A G+C++N+  L + L L    A+V  IDIDVH+G+G  E F+ +D+
Sbjct: 116 HHAQPSQADGYCFLNNAGLAVQLALNSGCAKVAVIDIDVHYGNGTAEGFYHSDK 169


>GSVIVT01035364001 assembled CDS
          Length = 359

 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 73/169 (43%), Gaps = 11/169 (6%)

Query: 22  PNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQH 81
           P    K  R+C    L+L   L K   I  P +A   +L   HS  Y   L+ +      
Sbjct: 62  PFDSSKWGRIC--RFLILDGALEKN-HIVEPLEASKDDLLVVHSESY---LNSLKTSLNV 115

Query: 82  LFANELVRYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKC 141
               E+    L  +C V + +    +   GGTI AA+    +    AIN  GG HH    
Sbjct: 116 AVIIEVPPVALLPNCLVQQKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSAG 173

Query: 142 EASGFCYINDLVLGI-LELLKYH-ARVLYIDIDVHHGDGVEEAFFFTDR 188
           +  GFC   D+ L I    ++ + +RV+ ID+D H G+G  E  F  DR
Sbjct: 174 KGGGFCAYADISLCIHYAFIRLNISRVMIIDLDAHQGNG-HELDFSNDR 221


>GSVIVT01007870001 assembled CDS
          Length = 646

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 10/170 (5%)

Query: 21  GPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQ 80
           G  HP  P R+      + S  + ++  ++   +A    +   HS ++V  +  I+    
Sbjct: 30  GDPHPENPDRIRAIWKKLESAGIPQRCVVFNAKEAEDKHILSVHSNNHVNLIKNISSKQF 89

Query: 81  HLFANELV-RYNLGEDCPVFENLFEFCQIYAGGTIDAARRL-NNQLCD-IAINWAGGLHH 137
               N +  ++N      + E   E   + AG  I+ A R+   +L    AI    G HH
Sbjct: 90  DSRRNRIASKFN---SIYMNEGSSEAAYLAAGSVIEVAERVAKGELSSAFAIVRPPG-HH 145

Query: 138 AKKCEASGFCYINDLVLGILELLKYH---ARVLYIDIDVHHGDGVEEAFF 184
           A++ E  GFC  N++ +    LL       ++L +D DVHHG+G ++ F+
Sbjct: 146 AEQNEPMGFCLYNNVAIATSFLLNERPDIKKILIVDWDVHHGNGTQKMFW 195