Jatropha Genome Database

JcCB0018541.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018541.30 + phase: 0 /short
         (46 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019501001 assembled CDS                                        79   5e-16
GSVIVT01027058001 assembled CDS                                        63   2e-11
GSVIVT01032655001 assembled CDS                                        61   1e-10

>GSVIVT01019501001 assembled CDS
          Length = 712

 Score = 78.6 bits (192), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/39 (82%), Positives = 35/39 (89%)

Query: 1  MADSTKVRLVRCPKCENLLPELADYSVYQCGGCGAVLRG 39
          MA+ +KVR+VRCPKCENLLPEL DY VYQCGGCGAVLR 
Sbjct: 1  MAEGSKVRVVRCPKCENLLPELPDYPVYQCGGCGAVLRA 39


>GSVIVT01027058001 assembled CDS
          Length = 720

 Score = 63.2 bits (152), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/39 (66%), Positives = 31/39 (79%)

Query: 1  MADSTKVRLVRCPKCENLLPELADYSVYQCGGCGAVLRG 39
          M +S KVRLVRCPKC+++LPE  D  VY CG CGAVL+G
Sbjct: 1  MIESAKVRLVRCPKCKHILPERPDVPVYLCGSCGAVLQG 39


>GSVIVT01032655001 assembled CDS
          Length = 1185

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 28/36 (77%)

Query: 4  STKVRLVRCPKCENLLPELADYSVYQCGGCGAVLRG 39
          +TK+RLVRCPKC  LLPE+A   +YQCGGCG  LR 
Sbjct: 6  ATKIRLVRCPKCWKLLPEVAGIPLYQCGGCGVFLRA 41