Jatropha Genome Database

JcCB0018541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018541.10 + phase: 1 /partial
         (178 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027057001 assembled CDS                                       242   8e-65
GSVIVT01030558001 assembled CDS                                       202   8e-53
GSVIVT01027971001 assembled CDS                                       129   5e-31
GSVIVT01000422001 assembled CDS                                       129   1e-30
GSVIVT01014545001 assembled CDS                                       128   1e-30
GSVIVT01001112001 assembled CDS                                       126   6e-30
GSVIVT01037892001 assembled CDS                                       103   4e-23
GSVIVT01011052001 assembled CDS                                        86   1e-17
GSVIVT01000176001 assembled CDS                                        77   5e-15

>GSVIVT01027057001 assembled CDS
          Length = 648

 Score =  242 bits (617), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 117/178 (65%), Positives = 137/178 (76%)

Query: 1   LYRYRLGDVVKIVGFHNSTPELKFVCRTSLLLTINIDKNSEKDLHLAVDXXXXXXXXXXI 60
           LYRYRLGDVVKI GFHN TPEL+FVCR +LLLTINIDKN+EKDL LAV+          +
Sbjct: 470 LYRYRLGDVVKIAGFHNMTPELQFVCRRNLLLTINIDKNTEKDLQLAVEAAAEVLAPEKV 529

Query: 61  EVVDFSSLVDLSTEPGHYVIFWEINKEPTDEILKECCNCLDRSFLDAGYVSSRKINAIGP 120
           EV+DF+S VD ST+PGHYVIFWEI+ E + E+  ECCNCLDRSF+DAGY+SSRK+N+IGP
Sbjct: 530 EVIDFTSQVDKSTDPGHYVIFWEISGEVSVEVSSECCNCLDRSFVDAGYISSRKVNSIGP 589

Query: 121 LELRVVRRGTFQKILDHYLGLGTVVSQFKTPRCVAPTXXXXXXXXXXXXXXXFFSNAF 178
           LEL++VRRGTFQKILDHYLG+G V+SQ+KTPRCV P                 FS AF
Sbjct: 590 LELKLVRRGTFQKILDHYLGIGGVLSQYKTPRCVNPNNNMVLQILYSNVVKSHFSTAF 647


>GSVIVT01030558001 assembled CDS
          Length = 592

 Score =  202 bits (513), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 89/155 (57%), Positives = 114/155 (73%)

Query: 1   LYRYRLGDVVKIVGFHNSTPELKFVCRTSLLLTINIDKNSEKDLHLAVDXXXXXXXXXXI 60
           LYRYRLGDVV++ GFH  TP+L F+CR  L+LT+NIDKN+EKDL   V+           
Sbjct: 416 LYRYRLGDVVEVAGFHKGTPKLNFICRRKLILTVNIDKNTEKDLQSVVEVGSQLLGKTKA 475

Query: 61  EVVDFSSLVDLSTEPGHYVIFWEINKEPTDEILKECCNCLDRSFLDAGYVSSRKINAIGP 120
           E+VDF+S  DL  +PGHY+I+WEI  E  D++L ECCN +D  F+D GY+ SRK ++IGP
Sbjct: 476 ELVDFTSHADLVKQPGHYIIYWEIKGEADDKVLSECCNEMDACFVDQGYIVSRKTHSIGP 535

Query: 121 LELRVVRRGTFQKILDHYLGLGTVVSQFKTPRCVA 155
           LEL +V RGTF+KILDH++G G  +SQFKTPRC A
Sbjct: 536 LELCIVERGTFKKILDHFIGKGAALSQFKTPRCTA 570


>GSVIVT01027971001 assembled CDS
          Length = 548

 Score =  129 bits (325), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 105/164 (64%), Gaps = 11/164 (6%)

Query: 1   LYRYRLGDVVKIVGFHNSTPELKFVCRTSLLLTINIDKNSEKDLHLAVDXXXXXXXXXXI 60
           L RYR+GDV+++ GFHN  P+ +F+CR +++L+I+ DK +E+DLH ++            
Sbjct: 359 LNRYRIGDVLQVTGFHNRAPQFRFICRRNVVLSIDNDKTNEEDLHRSITMAKKLLEPYNA 418

Query: 61  EVVDFSSLVDLSTEPGHYVIFWEIN--------KEPTD-EILKECCNCLDRSFLDAGYVS 111
            +V+++S  D S+ PGHYV++WEI           P D ++L+ECC  ++   LD  Y  
Sbjct: 419 LLVEYTSYADTSSLPGHYVLYWEITHCISTDSPSTPLDSKVLEECCIAVEEE-LDYIYRR 477

Query: 112 SRKIN-AIGPLELRVVRRGTFQKILDHYLGLGTVVSQFKTPRCV 154
            R  + ++GPLE+R+V+ GTF+ ++D ++  G  ++Q+KTPRC+
Sbjct: 478 CRTHDKSVGPLEIRLVQPGTFEDLMDLFISQGGSINQYKTPRCI 521


>GSVIVT01000422001 assembled CDS
          Length = 490

 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 96/159 (60%), Gaps = 6/159 (3%)

Query: 1   LYRYRLGDVVKIVGFHNSTPELKFVCRTSLLLTINIDKNSEKDLHLAVDXXXXXXXXXXI 60
           LYRYR+GD++ + GF N  P+ KF+CR ++ L+I+ DK  E +L  AV            
Sbjct: 299 LYRYRVGDILCVAGFKNKAPQFKFICRKNVALSIDSDKTDEFELQNAVKNAADHLLQFDA 358

Query: 61  EVVDFSSLVDLSTEPGHYVIFWEINKEPTDEI----LKECCNCLDRSFLDAGYVSSRKIN 116
            V +++S  D ST PGHYV++WEI       I     ++CC  ++ S L++ Y   R  +
Sbjct: 359 SVTEYTSYADTSTIPGHYVLYWEIGLSGATPIPPSVFEDCCLIMEES-LNSVYRQGRASD 417

Query: 117 -AIGPLELRVVRRGTFQKILDHYLGLGTVVSQFKTPRCV 154
            +IGPLE+R+V  GTF K++D+ L  G  ++Q+KTPRCV
Sbjct: 418 KSIGPLEIRIVEGGTFDKLMDYALSQGASINQYKTPRCV 456


>GSVIVT01014545001 assembled CDS
          Length = 569

 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 99/159 (62%), Gaps = 6/159 (3%)

Query: 1   LYRYRLGDVVKIVGFHNSTPELKFVCRTSLLLTINIDKNSEKDLHLAVDXXXXXXXXXXI 60
           LYRYR+GDV+++ GF N  P+  FVCR +++L+I+ DK  E +L  AV            
Sbjct: 376 LYRYRVGDVLRVAGFKNKAPQFNFVCRKNVVLSIDSDKTDEVELQAAVKNAVNHLMPFDA 435

Query: 61  EVVDFSSLVDLSTEPGHYVIFWEINKEPTDEI----LKECCNCLDRSFLDAGYVSSR-KI 115
            + +++S  D +T PGHYV++WE++   +  I     ++CC  ++ S L++ Y   R   
Sbjct: 436 TLTEYTSYADTTTIPGHYVLYWELSLRGSTPIPPSVFEDCCLTVEES-LNSVYRQGRVSD 494

Query: 116 NAIGPLELRVVRRGTFQKILDHYLGLGTVVSQFKTPRCV 154
            +IGPLE+++V  GTF K++D+ + LG  ++Q+KTPRCV
Sbjct: 495 KSIGPLEMKIVESGTFDKLMDYAISLGASINQYKTPRCV 533


>GSVIVT01001112001 assembled CDS
          Length = 495

 Score =  126 bits (316), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 101/160 (63%), Gaps = 9/160 (5%)

Query: 3   RYRLGDVVKIVGFHNSTPELKFVCRTSLLLTINIDKNSEKDLHLAVDXXXXXXXXXXIEV 62
            YR GD++ + GF+N+ P+ +FV R +++L+I+ DK +E+DL  AV             +
Sbjct: 304 EYRTGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQAKLLLEPYGFLL 363

Query: 63  VDFSSLVDLSTEPGHYVIFWEIN-------KEPTDEILKECCNCLDRSFLDAGYVS-SRK 114
            +++S  D S+ PGHYV+FWE+         EP   I+++CC+ ++ S LD+ Y    R+
Sbjct: 364 TEYTSYADTSSIPGHYVLFWELKTRGNNDLSEPDHTIMEQCCSTVEES-LDSVYRRCRRR 422

Query: 115 INAIGPLELRVVRRGTFQKILDHYLGLGTVVSQFKTPRCV 154
            N+IGPLE+R+V+ GTF  ++D  +  G+ V+Q+KTPRC+
Sbjct: 423 DNSIGPLEIRIVKPGTFDALMDFCVSQGSSVNQYKTPRCI 462


>GSVIVT01037892001 assembled CDS
          Length = 477

 Score =  103 bits (257), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 87/155 (56%), Gaps = 31/155 (20%)

Query: 1   LYRYRLGDVVKIVGFHNSTPELKFVCRTSLLLTINIDKNSEKDLHLAVDXXXXXXXXXXI 60
           LYRYR+GD++++ GFHNS P+  FV R ++LL+I+ DK  E +L  AVD           
Sbjct: 322 LYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASK------- 374

Query: 61  EVVDFSSLVDLSTEPGHYVIFWEINKEPTDEILKECCNCLDRSFLDAGYVSSRKI-NAIG 119
                              +  E+N   T  +L +CC  ++ S L++ Y   R   N+IG
Sbjct: 375 -------------------LLREVN---TSVLLGQCCLAMEES-LNSVYRQGRVADNSIG 411

Query: 120 PLELRVVRRGTFQKILDHYLGLGTVVSQFKTPRCV 154
           PLE+RVV+ GTF++++D+ +  G  ++Q+K PRCV
Sbjct: 412 PLEIRVVKSGTFEELMDYAISRGASINQYKVPRCV 446


>GSVIVT01011052001 assembled CDS
          Length = 578

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 10/161 (6%)

Query: 1   LYRYRLGDVVKIVGFHNSTPELKFVCRTSLLLTINIDKNSEKDLHLAVDXXXXXXXXXXI 60
            +RYRLGDVV++VGFHN++PE++FV R         +  +E+DL  A+           +
Sbjct: 398 FFRYRLGDVVRVVGFHNTSPEVEFVMRAP---KTPAEILTERDLMTAMGNFQLVLRTVKM 454

Query: 61  -EVVDFSSLVDLSTEPGHYVIFWEINKEPTDEILKECCNCLDRSF------LDAGYVSSR 113
            +V +F+S  DL + P    IF E+     DE L+E  + L R+F      L   Y   +
Sbjct: 455 PDVTEFASFFDLDSIPKQLKIFLEVAGVLQDEKLQELGSVLRRNFSSLEDGLGGVYKLRK 514

Query: 114 KINAIGPLELRVVRRGTFQKILDHYLGLGTVVSQFKTPRCV 154
               +GPL + +V+ G+F ++L      G   SQ+K P+ +
Sbjct: 515 GRGEVGPLLVSIVKPGSFNRLLQMATENGAPASQYKPPKII 555


>GSVIVT01000176001 assembled CDS
          Length = 486

 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 35/144 (24%)

Query: 12  IVGFHNSTPELKFVCRTSLLLTINIDKNSEKDLHLAVDXXXXXXXXXXIEVVDFSSLVDL 71
           + GFHNS P+ +F+ R ++LL+I+ DK  E +L  AV+          + + +F++ V  
Sbjct: 344 VTGFHNSAPQFQFIRRKNVLLSIDSDKTDEAELQKAVENAS-------LLLREFNTSV-- 394

Query: 72  STEPGHYVIFWEINKEPTDEILKECCNCLDRSFLDAGYVSSRKI-NAIGPLELRVVRRGT 130
                                   CC  ++ S L+  Y   R   N+IGPLE+RVV+ GT
Sbjct: 395 ------------------------CCLAMEES-LNTVYRQGRVADNSIGPLEIRVVKSGT 429

Query: 131 FQKILDHYLGLGTVVSQFKTPRCV 154
           F++++D+ +  G  ++Q+K PRCV
Sbjct: 430 FEELMDYAISRGASINQYKVPRCV 453