Jatropha Genome Database

JcCB0018351.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018351.30 - phase: 2 /partial
         (82 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011472001 assembled CDS                                        81   1e-16
GSVIVT01001332001 assembled CDS                                        61   1e-10
GSVIVT01007006001 assembled CDS                                        55   1e-08
GSVIVT01024624001 assembled CDS                                        48   1e-06
GSVIVT01037775001 assembled CDS                                        47   2e-06
GSVIVT01030258001 assembled CDS                                        46   3e-06
GSVIVT01014854001 assembled CDS                                        45   7e-06
GSVIVT01030046001 assembled CDS                                        45   8e-06

>GSVIVT01011472001 assembled CDS
          Length = 889

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 58/74 (78%), Gaps = 4/74 (5%)

Query: 12  SATDPKAVITTYEGKHNHDLPAAKGSIHSTVNSNSAELKQQDM--EKQDNRRDLGSNN-- 67
           ++TDPKAVITTYEGKHNHD+PAA+ S H+T NSN+ +LKQ ++  EK+   +++G  N  
Sbjct: 814 ASTDPKAVITTYEGKHNHDVPAARNSSHNTANSNATQLKQHNVVAEKRALLKEMGFRNKD 873

Query: 68  QQPIARLRLKEGQI 81
           ++P+A L+LKE QI
Sbjct: 874 KKPVALLQLKEEQI 887


>GSVIVT01001332001 assembled CDS
          Length = 435

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/33 (81%), Positives = 30/33 (90%)

Query: 12  SATDPKAVITTYEGKHNHDLPAAKGSIHSTVNS 44
           +ATDPKAVITTYEGKHNHD+PAAK S H+T NS
Sbjct: 399 AATDPKAVITTYEGKHNHDVPAAKSSSHNTANS 431


>GSVIVT01007006001 assembled CDS
          Length = 550

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/31 (74%), Positives = 27/31 (87%)

Query: 15  DPKAVITTYEGKHNHDLPAAKGSIHSTVNSN 45
           DPKAVITTYEGKHNHD+PAA+ + H TV S+
Sbjct: 403 DPKAVITTYEGKHNHDVPAARSNTHDTVGSS 433


>GSVIVT01024624001 assembled CDS
          Length = 570

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/29 (72%), Positives = 25/29 (86%)

Query: 15  DPKAVITTYEGKHNHDLPAAKGSIHSTVN 43
           D +AVITTYEGKHNHD+PAA+GS   +VN
Sbjct: 475 DLRAVITTYEGKHNHDVPAARGSGSHSVN 503


>GSVIVT01037775001 assembled CDS
          Length = 552

 Score = 46.6 bits (109), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/25 (76%), Positives = 22/25 (88%)

Query: 15  DPKAVITTYEGKHNHDLPAAKGSIH 39
           DPKAVITTYEGKHNHD+P A+ + H
Sbjct: 410 DPKAVITTYEGKHNHDVPTARTNSH 434


>GSVIVT01030258001 assembled CDS
          Length = 513

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 24/26 (92%)

Query: 12  SATDPKAVITTYEGKHNHDLPAAKGS 37
           S+ D +AV+TTYEGKHNHD+PAA+GS
Sbjct: 393 SSKDIRAVLTTYEGKHNHDVPAARGS 418


>GSVIVT01014854001 assembled CDS
          Length = 622

 Score = 45.1 bits (105), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 8/53 (15%)

Query: 15  DPKAVITTYEGKHNHDLPAAKGSIHSTVNSNSAELKQQDMEKQDNRRDLGSNN 67
           D K+VITTYEGKHNHD+PAA+ S H  VNS        +M + D     G+ N
Sbjct: 482 DLKSVITTYEGKHNHDVPAARNSSH--VNS------VHNMARFDRPPSFGTFN 526


>GSVIVT01030046001 assembled CDS
          Length = 364

 Score = 44.7 bits (104), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 24/32 (75%)

Query: 15  DPKAVITTYEGKHNHDLPAAKGSIHSTVNSNS 46
           DPK VITTYEG+H+HD+P A+   H++   N+
Sbjct: 284 DPKMVITTYEGQHDHDMPPARTVTHNSAGPNT 315